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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117WGBS
  • 103RRBS
Assay category
  • 220DNA methylation
  • 220DNA sequencing
Date released
  • 82September, 2011
  • 35July, 2013
  • 28June, 2014
  • 19December, 2010
  • 12June, 2015
  • 11March, 2016
  • 9December, 2014
  • 8August, 2015
  • 6October, 2016
  • 3October, 2015
  • 2July, 2012
  • 1February, 2016
  • 1July, 2014
  • 1June, 2016
  • 1May, 2016
  • 1September, 2014
Available data
  • 11322fastq
  • 10052bam
  • 8882bigWig
  • 5733bed narrowPeak
  • 5391bigBed narrowPeak
  • 2248bed broadPeak
  • 2138tsv
  • 1777bigBed broadPeak
  • 1434tagAlign
  • 331sra
  • 288bed bedRnaElements
  • 288bigBed bedRnaElements
  • 277idat
  • 269gtf
  • 223bed tss_peak
  • 223bigBed tss_peak
  • 223gff gff3
  • 220bed bedMethyl
  • 220bigBed bedMethyl
  • 122bed idr_peak
  • 122bigBed idr_peak
  • 115bed bed6+
  • 115bigBed bed6+
  • 115rcc
  • 110tar
  • 64bed bedLogR
  • 63bigBed bedLogR
  • 59sam
  • 59wig
  • 43bed bed12
  • 43bigBed bed12
  • 30bed bedGraph
  • 27bed bedExonScore
  • 27bigBed bedExonScore
  • 25csfasta
  • 18bed bed9
  • 18bigBed bed9
  • 13csqual
  • 12bed bed3+
  • 12hdf5
  • 10bigBed bed3+
  • 9vcf
  • 8bed peptideMapping
  • 8bigBed peptideMapping
  • 7bed bed3
  • 7bigBed bed3
  • 6bed modPepMap
  • 6bed pepMap
  • 6bigBed modPepMap
  • 6bigBed pepMap
  • 5bedpe
  • 5hic
  • 4CEL
  • 3fasta
Organism
  • 148Homo sapiens
  • 72Mus musculus
Biosample type
  • 118tissue
  • 52immortalized cell line
  • 38primary cell
  • 7in vitro differentiated cells
  • 3stem cell
  • 2induced pluripotent stem cell line
Organ
  • 26brain
  • 14heart
  • 13connective tissue
  • 12embryonic structure
  • 10liver
  • 9intestine
  • 9lung
  • 9skin of body
  • 8kidney
  • 8stomach
  • 7muscle organ
  • 3adrenal gland
  • 3esophagus
  • 3extraembryonic component
  • 3pancreas
  • 3small intestine
  • 3spleen
  • 2adipose tissue
  • 2blood vessel
  • 2bronchus
  • 2eye
  • 2gonad
  • 2large intestine
  • 2mammary gland
  • 2penis
  • 1breast
  • 1mouth
  • 1ovary
  • 1placenta
  • 1prostate gland
  • 1testis
  • 1thymus
  • 1uterus
Project
  • 185ENCODE
  • 35Roadmap
Genome assembly (visualization)
  • 103hg19
  • 72mm10
  • 44GRCh38
Audit category:
  • 5insufficient read length
  • 2insufficient coverage
Audit category:
  • 1high lambda C methylation ratio
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

220 results

search-icontable-tab-icon
Clear Filters
WGBS
RRBS
tissue
forebrain8
heart8
hindbrain8
liver71
midbrain8
immortalized cell line
MCF-75
GM1287822
HepG212
LNCaP clone FGC3
HEK2932
primary cell
astrocyte2
bronchial epithelial cell2
foreskin fibroblast2
mammary epithelial cell11
skeletal muscle myoblast11
in vitro differentiated cells
myotube2
hepatocyte1
mesendoderm1
neuronal stem cell1
smooth muscle cell1
stem cell
H1-hESC21
induced pluripotent stem cell line
iPS DF 19.111
iPS DF 6.91
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