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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
polyA mRNA RNA-seq
1
ChIP-seq
Assay category
17
Transcription
1
DNA binding
Target of assay
1
transcription factor
Date released
16
January, 2012
1
February, 2011
1
March, 2014
Available data
11322
fastq
10052
bam
8882
bigWig
5733
bed narrowPeak
5391
bigBed narrowPeak
2248
bed broadPeak
2138
tsv
1777
bigBed broadPeak
1434
tagAlign
331
sra
288
bed bedRnaElements
288
bigBed bedRnaElements
277
idat
269
gtf
223
bed tss_peak
223
bigBed tss_peak
223
gff gff3
220
bed bedMethyl
220
bigBed bedMethyl
122
bed idr_peak
122
bigBed idr_peak
115
bed bed6+
115
bigBed bed6+
115
rcc
110
tar
64
bed bedLogR
63
bigBed bedLogR
59
sam
59
wig
43
bed bed12
43
bigBed bed12
30
bed bedGraph
27
bed bedExonScore
27
bigBed bedExonScore
25
csfasta
18
bed bed9
18
bigBed bed9
13
csqual
12
bed bed3+
12
hdf5
10
bigBed bed3+
9
vcf
8
bed peptideMapping
8
bigBed peptideMapping
7
bed bed3
7
bigBed bed3
6
bed modPepMap
6
bed pepMap
6
bigBed modPepMap
6
bigBed pepMap
5
bedpe
5
hic
4
CEL
3
fasta
Organism
17
Homo sapiens
1
Mus musculus
Biosample type
10
immortalized cell line
4
primary cell
2
stem cell
1
in vitro differentiated cells
1
tissue
Organ
1
blood vessel
1
connective tissue
1
liver
1
lung
1
skin of body
1
vein
Project
18
ENCODE
Genome assembly (visualization)
1
mm10
1
mm9
Audit category:
1
insufficient replicate concordance
Audit category:
5
inconsistent platforms
1
low read length
1
mild to moderate bottlenecking
BIOSAMPLE
ASSAY
18 results
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polyA mRNA RNA-seq
ChIP-seq
immortalized cell line
GM12878
2
GM12891
1
GM12892
1
HCT116
1
HeLa-S3
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
skeletal muscle myoblast
1
stem cell
H1-hESC
2
in vitro differentiated cells
myocyte
1
tissue
liver
1
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