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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • microRNA counts
    115
Assay category
  • Transcription
    115
Date released
  • March, 2016
    30
  • January, 2017
    24
  • November, 2015
    16
  • February, 2016
    15
  • July, 2016
    11
  • January, 2016
    7
  • August, 2016
    6
  • December, 2015
    5
  • February, 2017
    1
Available data
  • fastq
    14306
  • bam
    13271
  • bigWig
    12115
  • bed narrowPeak
    7586
  • bigBed narrowPeak
    7576
  • tsv
    2472
  • bed broadPeak
    2466
  • bigBed broadPeak
    2007
  • tagAlign
    1368
  • bed bed3+
    918
  • sra
    672
  • tar
    582
  • bed bedRnaElements
    288
  • bigBed bedRnaElements
    288
  • bed bedMethyl
    278
  • bigBed bedMethyl
    278
  • idat
    275
  • gtf
    269
  • bed tss_peak
    235
  • bigBed tss_peak
    235
  • gff gff3
    235
  • bed idr_peak
    134
  • bigBed idr_peak
    134
  • bed bed6+
    115
  • bigBed bed6+
    115
  • rcc
    115
  • bed bedLogR
    64
  • bigBed bedLogR
    63
  • sam
    59
  • wig
    59
  • bed bed12
    43
  • bigBed bed12
    43
  • bed bedGraph
    30
  • bed bedExonScore
    27
  • bigBed bedExonScore
    27
  • csfasta
    25
  • hdf5
    20
  • bed bed9
    18
  • bigBed bed9
    18
  • hic
    16
  • vcf
    16
  • bigBed bed3+
    13
  • csqual
    13
  • bed peptideMapping
    8
  • bigBed peptideMapping
    8
  • bed bed3
    7
  • bigBed bed3
    7
  • bed modPepMap
    6
  • bed pepMap
    6
  • bigBed modPepMap
    6
  • bigBed pepMap
    6
  • bedpe
    5
  • CEL
    4
  • fasta
    3
Experiment status
  • released
    115
Organism
  • Mus musculus
    77
  • Homo sapiens
    38
Biosample type
  • tissue
    101
  • cell line
    8
  • in vitro differentiated cells
    5
  • primary cell
    1
Organ
  • brain
    24
  • embryo
    13
  • heart
    12
  • limb
    11
  • liver
    10
  • epithelium
    8
  • intestine
    5
  • musculature of body
    5
  • kidney
    4
  • lung
    4
  • skin of body
    4
  • stomach
    4
  • gonad
    3
  • adrenal gland
    2
  • blood
    2
  • bodily fluid
    2
  • pancreas
    2
  • prostate gland
    2
  • testis
    2
  • thyroid gland
    2
  • uterus
    2
  • vagina
    2
  • blood vessel
    1
  • connective tissue
    1
  • large intestine
    1
  • mammary gland
    1
  • ovary
    1
  • spleen
    1
  • thymus
    1
  • urinary bladder
    1
  • vasculature
    1
  • vein
    1
Cell
  • cancer cell
    4
  • epithelial cell
    4
  • stem cell
    2
  • endothelial cell
    1
  • fibroblast
    1
  • induced pluripotent stem cell
    1
  • lymphoblast
    1
  • neural cell
    1
  • smooth muscle cell
    1
Project
  • ENCODE
    115
Genome assembly
  • mm10
    77
  • GRCh38
    38
Lab
  • Ali Mortazavi, UCI
    115
BIOSAMPLE
ASSAY

115 results

Clear Filters
microRNA counts
tissue
forebrain8
heart8
hindbrain8
midbrain8
liver7
cell line
GM128781
GM232481
GM233381
H1-hESC1
HCT1161
in vitro differentiated cells
bipolar neuron1
hepatocyte1
myocyte1
neural progenitor cell1
smooth muscle cell1
primary cell
endothelial cell of umbilical vein1
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