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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • shRNA RNA-seq
    274
  • CRISPRi RNA-seq
    77
  • siRNA RNA-seq
    50
  • CRISPR RNA-seq
    31
  • RIP-seq
    21
  • polyA RNA-seq
    18
  • total RNA-seq
    11
  • small RNA-seq
    7
  • ChIA-PET
    6
  • CAGE
    4
  • polyA depleted RNA-seq
    3
  • 5C
    1
  • RAMPAGE
    1
  • microRNA-seq
    1
Assay category
  • RNA binding
    21
Target of assay
  • RNA binding protein
    21
  • transcription factor
    13
  • chromatin remodeller
    11
  • other post-translational modification
    1
Date released
  • May, 2016
    21
Available data
  • bam
    26
  • fastq
    26
  • tsv
    21
  • bigWig
    4
  • bed broadPeak
    3
  • bigBed broadPeak
    3
Experiment status
  • archived
    18
  • released
    3
Organism
  • Homo sapiens
    21
Biosample type
  • cell line
    21
Organ
  • blood
    21
  • bodily fluid
    21
Cell
  • cancer cell
    21
Project
  • ENCODE
    21
Genome assembly
  • hg19
    3
Lab
  • John Rinn, Broad
    21
Audit category:
  • partially characterized antibody
    12
  • uncharacterized antibody
    6
BIOSAMPLE
ASSAY

21 results

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RIP-seq
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