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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    698
  • shRNA RNA-seq
    276
  • eCLIP
    251
  • CRISPRi RNA-seq
    77
  • siRNA RNA-seq
    50
  • genetic modification DNase-seq
    46
  • CRISPR RNA-seq
    31
  • RIP-seq
    29
  • polyA RNA-seq
    19
  • RNA microarray
    12
  • total RNA-seq
    12
  • DNase-seq
    10
  • RIP-chip
    10
  • CAGE
    9
  • ChIA-PET
    9
  • small RNA-seq
    8
  • iCLIP
    7
  • MS-MS
    6
  • RNA-PET
    6
  • Repli-seq
    6
  • DNA-PET
    3
  • DNAme array
    3
  • FAIRE-seq
    3
  • genotyping HTS
    3
  • polyA depleted RNA-seq
    3
  • 5C
    2
  • MRE-seq
    2
  • genotyping array
    2
  • microRNA-seq
    2
  • Hi-C
    1
  • MNase-seq
    1
  • MeDIP-seq
    1
  • RAMPAGE
    1
  • RRBS
    1
  • WGBS
    1
  • microRNA counts
    1
Assay category
  • Transcription
    276
  • RNA binding
    29
Target of assay
  • RNA binding protein
    272
  • transcription factor
    58
  • control
    33
  • chromatin remodeller
    13
  • other post-translational modification
    1
Date released
  • October, 2014
    52
  • March, 2016
    36
  • August, 2015
    33
  • December, 2014
    27
  • November, 2014
    26
  • June, 2014
    25
  • May, 2016
    25
  • January, 2016
    24
  • June, 2016
    20
  • September, 2016
    13
  • January, 2017
    11
  • August, 2011
    4
  • December, 2017
    4
  • February, 2016
    4
  • August, 2016
    1
Available data
  • bam
    300
  • fastq
    300
  • tsv
    295
  • bigWig
    278
  • tar
    217
  • bed broadPeak
    3
  • bigBed broadPeak
    3
Experiment status
  • released
    276
  • archived
    24
  • revoked
    5
Organism
  • Homo sapiens
    305
Biosample type
  • cell line
    305
Organ
  • blood
    305
  • bodily fluid
    305
Cell
  • cancer cell
    305
Project
  • ENCODE
    305
Genome assembly
  • hg19
    276
  • GRCh38
    268
Lab
  • Brenton Graveley, UConn
    276
  • John Rinn, Broad
    25
  • Scott Tenenbaum, SUNY-Albany
    4
Audit category:
  • missing possible_controls
    2
Audit category:
  • partially characterized antibody
    12
  • uncharacterized antibody
    6
  • antibody not characterized to standard
    3
  • missing controlled_by
    2
  • missing documents
    2
BIOSAMPLE
ASSAY

305 results

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shRNA RNA-seq
RIP-seq
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