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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 380DNase-seq
  • 2genetic modification DNase-seq
Assay category
  • 382DNA accessibility
Date released
  • 261July, 2013
  • 33December, 2010
  • 16May, 2011
  • 15March, 2012
  • 7April, 2011
  • 7September, 2012
  • 6August, 2015
  • 6November, 2012
  • 6October, 2011
  • 5April, 2013
  • 5July, 2011
  • 5July, 2012
  • 4October, 2015
  • 2September, 2016
  • 1February, 2013
  • 1July, 2016
  • 1June, 2012
  • 1May, 2013
Available data
  • 382bam
  • 382bed narrowPeak
  • 382bigBed narrowPeak
  • 382fastq
  • 374bed broadPeak
  • 374bigBed broadPeak
  • 121bigWig
  • 49tagAlign
Organism
  • 350Homo sapiens
  • 32Mus musculus
Biosample type
  • 239tissue
  • 85primary cell
  • 36immortalized cell line
  • 11in vitro differentiated cells
  • 7stem cell
  • 4induced pluripotent stem cell line
Organ
  • 66kidney
  • 46muscle organ
  • 29lung
  • 28connective tissue
  • 22intestine
  • 21skin of body
  • 18brain
  • 17ureter
  • 14stomach
  • 12large intestine
  • 11heart
  • 10small intestine
  • 8thymus
  • 7adrenal gland
  • 7blood vessel
  • 6embryonic structure
  • 5extraembryonic component
  • 5gonad
  • 4eye
  • 4placenta
  • 4spinal cord
  • 3liver
  • 2adipose tissue
  • 2artery
  • 2bronchus
  • 2mammary gland
  • 2mouth
  • 2ovary
  • 2pancreas
  • 2penis
  • 2spleen
  • 2testis
  • 1bone element
  • 1lymphatic vessel
  • 1prostate gland
  • 1skeleton
  • 1tongue
Project
  • 261Roadmap
  • 121ENCODE
Genome assembly (visualization)
  • 342GRCh38
  • 342hg19
  • 32mm10
Audit category:
  • 166extremely low spot score
  • 1extremely low read depth
Audit category:
  • 71insufficient spot score
  • 4insufficient read length
  • 2unreplicated experiment
  • 0insufficient read depth
Audit category:
  • 2854low read length
  • 2426mild to moderate bottlenecking
  • 1814low read depth
  • 1090moderate library complexity
  • 967inconsistent platforms
  • 849inconsistent control read length
  • 736control low read depth
  • 568antibody characterized with exemption
  • 475mixed read lengths
  • 382insufficient read depth
  • 332borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 149mixed run types
  • 133inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

382 results

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Clear Filters
DNase-seq
genetic modification DNase-seq
tissue
muscle of arm15
stomach14
muscle of leg13
brain12
large intestine12
primary cell
common myeloid progenitor, CD34-positive11
skin fibroblast9
T-cell4
B cell3
CD4-positive helper T cell3
immortalized cell line
K56212
MCF-72
MEL cell line2
WI382
A5491
in vitro differentiated cells
cardiac mesoderm3
erythroblast2
hematopoietic multipotent progenitor cell2
acute myeloid leukemia1
adipocyte1
stem cell
WW62
ELF-11
ES-E141
H1-hESC1
H7-hESC1
induced pluripotent stem cell line
CWRU11
iPS DF 19.71
iPS DF 4.71
iPS DF 6.91
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