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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 543ChIP-seq
  • 23ChIA-PET
  • 2eCLIP
Assay category
  • 543DNA binding
  • 233D chromatin structure
  • 2RNA binding
Target of assay
  • 469transcription factor
  • 113RNA binding protein
  • 96histone
  • 96histone modification
  • 85recombinant protein
  • 60broad histone mark
  • 36narrow histone mark
  • 8other context
  • 8other post-translational modification
  • 1chromatin remodeller
Date released
  • 117November, 2016
  • 68June, 2017
  • 50July, 2014
  • 47October, 2016
  • 41January, 2017
  • 36June, 2016
  • 33December, 2016
  • 33July, 2016
  • 22May, 2016
  • 20June, 2014
  • 20March, 2017
  • 19September, 2016
  • 15April, 2017
  • 11August, 2016
  • 10March, 2016
  • 6April, 2016
  • 5February, 2017
  • 4February, 2016
  • 4May, 2017
  • 4September, 2014
  • 1December, 2014
  • 1January, 2016
Available data
  • 560fastq
  • 536bam
  • 389bed narrowPeak
  • 389bigBed narrowPeak
  • 389bigWig
  • 5bed bed3
  • 5bigBed bed3
  • 5tsv
Organism
  • 533Homo sapiens
  • 35Mus musculus
Biosample type
  • 269immortalized cell line
  • 263tissue
  • 21in vitro differentiated cells
  • 8induced pluripotent stem cell line
  • 6primary cell
  • 1stem cell
Organ
  • 36intestine
  • 33liver
  • 30stomach
  • 28large intestine
  • 26muscle organ
  • 19skin of body
  • 18lung
  • 16connective tissue
  • 16esophagus
  • 14adipose tissue
  • 10brain
  • 9breast
  • 9gonad
  • 9heart
  • 8adrenal gland
  • 8pancreas
  • 8spleen
  • 6prostate gland
  • 6vagina
  • 5ovary
  • 5thyroid gland
  • 4blood vessel
  • 4testis
  • 4uterus
  • 2artery
  • 2kidney
  • 1embryonic structure
Project
  • 568ENCODE
Genome assembly (visualization)
  • 357hg19
  • 352GRCh38
  • 35mm10
Audit category:
  • 55insufficient read depth
  • 38control insufficient read depth
  • 28severe bottlenecking
  • 24poor library complexity
  • 12missing controlled_by
  • 8unreplicated experiment
  • 1missing input control
  • 1partially characterized antibody
Audit category:
  • 2854low read length
  • 2426mild to moderate bottlenecking
  • 1814low read depth
  • 1090moderate library complexity
  • 967inconsistent platforms
  • 849inconsistent control read length
  • 736control low read depth
  • 568antibody characterized with exemption
  • 475mixed read lengths
  • 382insufficient read depth
  • 332borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 149mixed run types
  • 133inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

568 results

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Clear Filters
ChIP-seq
ChIA-PET
eCLIP
immortalized cell line
HepG21031
K562394
MCF-7221
GM12878202
A5498
tissue
liver30
stomach17
sigmoid colon14
transverse colon14
gastroesophageal sphincter13
in vitro differentiated cells
neural cell8
bipolar neuron6
neural progenitor cell2
smooth muscle cell2
hepatocyte1
induced pluripotent stem cell line
induced pluripotent stem cell8
primary cell
IMR-902
fibroblast of arm2
B cell1
epithelial cell of prostate1
stem cell
H91
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