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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 58DNAme array
  • 55genotyping array
  • 40genetic modification DNase-seq
  • 32ChIP-seq
  • 27ATAC-seq
  • 24DNase-seq
  • 21polyA mRNA RNA-seq
  • 21total RNA-seq
  • 17Repli-chip
  • 9RAMPAGE
  • 3ChIA-PET
  • 2small RNA-seq
  • 1genotyping HTS
Assay category
  • 91DNA accessibility
  • 58DNA methylation
  • 56Genotyping
  • 53Transcription
  • 32DNA binding
  • 17Replication timing
  • 33D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 19narrow histone mark
  • 11broad histone mark
  • 5transcription factor
  • 1RNA binding protein
Date released
  • 59January, 2017
  • 58June, 2017
  • 56August, 2016
  • 32March, 2017
  • 22July, 2016
  • 21May, 2016
  • 17July, 2015
  • 15August, 2015
  • 7November, 2016
  • 4April, 2015
  • 3April, 2016
  • 3October, 2016
  • 3September, 2014
  • 2July, 2014
  • 2March, 2016
  • 2September, 2016
  • 1December, 2016
  • 1June, 2014
  • 1November, 2015
  • 1October, 2015
Available data
  • 179fastq
  • 141bam
  • 122bigWig
  • 113idat
  • 79tsv
  • 75bed narrowPeak
  • 71bigBed narrowPeak
  • 61bed broadPeak
  • 61bigBed broadPeak
  • 17tar
  • 9bed tss_peak
  • 9bigBed tss_peak
  • 9gff gff3
  • 1vcf
Organism
  • 274Homo sapiens
  • 34Mus musculus
Biosample type
  • 121immortalized cell line
  • 78primary cell
  • 77in vitro differentiated cells
  • 25tissue
  • 6stem cell
  • 3induced pluripotent stem cell line
Organ
  • 10connective tissue
  • 8brain
  • 8kidney
  • 7eye
  • 6liver
  • 5lung
  • 5muscle organ
  • 4extraembryonic component
  • 4skin of body
  • 3heart
  • 3mammary gland
  • 3mouth
  • 2urinary bladder
  • 1embryonic structure
  • 1placenta
  • 1tongue
Project
  • 223ENCODE
  • 87GGR
Genome assembly (visualization)
  • 114hg19
  • 81GRCh38
  • 2mm10
  • 1mm10-minimal
Audit category:
  • 4extremely low spot score
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 9low spot score
  • 8antibody characterized with exemption
  • 7low read length
  • 7mixed run types
  • 5mild to moderate bottlenecking
  • 4inconsistent control read length
  • 2control low read depth
  • 2inconsistent control run_type
  • 2inconsistent platforms
  • 2insufficient read depth
  • 1low read depth
  • 1mixed read lengths
  • 1moderate library complexity
BIOSAMPLE
ASSAY

310 results

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Clear Filters
DNAme array
genotyping array
genetic modification DNase-seq
ChIP-seq
ATAC-seq
DNase-seq
polyA mRNA RNA-seq
total RNA-seq
Repli-chip
RAMPAGE
ChIA-PET
small RNA-seq
genotyping HTS
immortalized cell line
K5621140
Panc122
ACC1123
H4111
HT1080111
primary cell
inflammation-experienced regulatory T-cells316
regulatory T cell316
activated regulatory T-cells315
fibroblast of arm1111
skeletal muscle myoblast22
in vitro differentiated cells
dendritic cell112420
myotube221
bipolar neuron12
hepatocyte12
erythroid progenitor cell2
tissue
heart111
liver111
urinary bladder11
Ammon's horn1
camera-type eye1
stem cell
H7-hESC111
BG011
R11
amniotic stem cell1
induced pluripotent stem cell line
induced pluripotent stem cell12
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