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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21ChIP-seq
  • 5RIP-seq
Assay category
  • 21DNA binding
  • 5RNA binding
Target of assay
  • 13transcription factor
  • 12broad histone mark
  • 12histone
  • 12histone modification
  • 9chromatin remodeller
  • 5RNA binding protein
Date released
  • 9May, 2016
  • 6July, 2014
  • 4January, 2017
  • 3December, 2016
  • 1June, 2016
  • 1March, 2017
  • 1September, 2014
Available data
  • 21fastq
  • 20bam
  • 13bed narrowPeak
  • 13bigBed narrowPeak
  • 13bigWig
  • 5tsv
Organism
  • 26Homo sapiens
Biosample type
  • 17immortalized cell line
  • 4in vitro differentiated cells
  • 4stem cell
  • 1induced pluripotent stem cell line
Project
  • 26ENCODE
Genome assembly (visualization)
  • 13hg19
  • 12GRCh38
Audit category:
  • 1extremely low read depth
  • 1extremely low read length
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 17low read length
  • 13mild to moderate bottlenecking
  • 10inconsistent control read length
  • 8mixed read lengths
  • 7low read depth
  • 6borderline replicate concordance
  • 4inconsistent control run_type
  • 4moderate library complexity
  • 2control low read depth
  • 2mixed run types
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

26 results

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Clear Filters
ChIP-seq
RIP-seq
immortalized cell line
K56225
HepG22
A6731
ACC1121
DOHH21
in vitro differentiated cells
mid-neurogenesis radial glial cells1
neural cell1
neuroepithelial stem cell1
radial glial cell1
stem cell
H1-hESC3
H91
induced pluripotent stem cell line
induced pluripotent stem cell1
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