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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
21
RIP-seq
3
eCLIP
2
iCLIP
Assay category
85
DNA binding
26
RNA binding
Target of assay
96
transcription factor
56
RNA binding protein
50
chromatin remodeller
7
other post-translational modification
5
histone
5
histone modification
5
narrow histone mark
Date released
34
July, 2014
22
May, 2016
20
November, 2016
9
December, 2016
9
January, 2017
5
June, 2016
3
September, 2014
2
February, 2017
2
July, 2016
2
November, 2015
1
August, 2016
1
July, 2015
1
October, 2016
Available data
101
fastq
78
bam
52
bed narrowPeak
52
bigBed narrowPeak
50
bigWig
20
tsv
Organism
111
Homo sapiens
Biosample type
92
immortalized cell line
7
stem cell
6
in vitro differentiated cells
5
tissue
1
primary cell
Organ
7
liver
Project
111
ENCODE
Genome assembly (visualization)
52
hg19
48
GRCh38
Audit category:
1472
insufficient read depth
880
control insufficient read depth
624
missing controlled_by
481
insufficient read length
310
unreplicated experiment
224
poor library complexity
213
severe bottlenecking
203
control low read depth
120
insufficient spot score
111
partially characterized antibody
83
missing possible_controls
68
missing RNA fragment size
49
missing documents
47
insufficient replicate concordance
27
antibody not characterized to standard
26
uncharacterized antibody
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
44
mild to moderate bottlenecking
34
low read depth
33
low read length
19
borderline replicate concordance
19
inconsistent control read length
19
moderate library complexity
10
mixed read lengths
6
inconsistent control run_type
5
mixed run types
4
control low read depth
4
inconsistent platforms
1
antibody characterized with exemption
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
RIP-seq
eCLIP
iCLIP
immortalized cell line
K562
10
14
2
2
GM12878
14
7
A549
18
MCF-7
4
HepG2
2
1
+ See 14 more…
stem cell
H1-hESC
7
in vitro differentiated cells
bipolar neuron
2
hepatocyte
2
neural cell
1
neural progenitor cell
1
tissue
liver
5
primary cell
neutrophil
1
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