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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
polyA mRNA RNA-seq
2
total RNA-seq
Assay category
10
Transcription
Date released
5
February, 2011
2
November, 2010
1
January, 2012
1
July, 2013
1
November, 2016
Available data
10
bam
10
bigWig
10
fastq
10
tsv
1
csfasta
1
csqual
Organism
10
Homo sapiens
Biosample type
5
immortalized cell line
3
stem cell
2
primary cell
Organ
1
blood vessel
1
vein
Project
8
ENCODE
2
Roadmap
Genome assembly (visualization)
10
GRCh38
10
hg19
Audit category:
1472
insufficient read depth
880
control insufficient read depth
624
missing controlled_by
481
insufficient read length
310
unreplicated experiment
224
poor library complexity
213
severe bottlenecking
203
control low read depth
120
insufficient spot score
111
partially characterized antibody
83
missing possible_controls
68
missing RNA fragment size
49
missing documents
47
insufficient replicate concordance
27
antibody not characterized to standard
26
uncharacterized antibody
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
6
low read depth
5
missing spikeins
1
inconsistent platforms
BIOSAMPLE
ASSAY
10 results
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polyA mRNA RNA-seq
total RNA-seq
immortalized cell line
K562
2
GM12878
1
HeLa-S3
1
HepG2
1
stem cell
H1-hESC
2
1
primary cell
IMR-90
1
endothelial cell of umbilical vein
1
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