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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17ChIP-seq
  • 13total RNA-seq
  • 12polyA mRNA RNA-seq
  • 2MRE-seq
  • 2MeDIP-seq
  • 2shRNA RNA-seq
  • 1RRBS
Assay category
  • 27Transcription
  • 17DNA binding
  • 5DNA methylation
  • 3DNA sequencing
Target of assay
  • 14control
  • 5RNA binding protein
  • 3transcription factor
  • 2nucleotide modification
Date released
  • 20April, 2016
  • 15July, 2013
  • 6June, 2014
  • 4May, 2014
  • 2October, 2016
  • 1February, 2017
  • 1October, 2015
Available data
  • 34bam
  • 30fastq
  • 28bigWig
  • 27tsv
  • 13sra
  • 1bed narrowPeak
  • 1bigBed narrowPeak
  • 1tagAlign
Organism
  • 44Homo sapiens
  • 4Mus musculus
Biosample type
  • 34immortalized cell line
  • 13tissue
  • 2primary cell
Organ
  • 6embryonic structure
  • 6extraembryonic component
  • 1blood
  • 1brain
  • 1intestine
  • 1large intestine
  • 1placenta
Project
  • 34ENCODE
  • 15Roadmap
Genome assembly (visualization)
  • 28hg19
  • 27GRCh38
Audit category:
  • 2missing possible_controls
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 10low read depth
  • 10missing spikeins
  • 2low read length
  • 2mild to moderate bottlenecking
  • 1low replicate concordance
  • 1moderate library complexity
BIOSAMPLE
ASSAY

49 results

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ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
MRE-seq
MeDIP-seq
shRNA RNA-seq
RRBS
immortalized cell line
HepG2366
K562652
CH12.LX11
MCF-711
MEL cell line11
tissue
chorionic villus4
placental basal plate2
trophoblast2
cerebellum1
chorion1
primary cell
CD8-positive, alpha-beta memory T cell1
peripheral blood mononuclear cell1
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