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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
13
total RNA-seq
12
polyA mRNA RNA-seq
2
MRE-seq
2
MeDIP-seq
2
shRNA RNA-seq
1
RRBS
Assay category
27
Transcription
17
DNA binding
5
DNA methylation
3
DNA sequencing
Target of assay
14
control
5
RNA binding protein
3
transcription factor
2
nucleotide modification
Date released
20
April, 2016
15
July, 2013
6
June, 2014
4
May, 2014
2
October, 2016
1
February, 2017
1
October, 2015
Available data
34
bam
30
fastq
28
bigWig
27
tsv
13
sra
1
bed narrowPeak
1
bigBed narrowPeak
1
tagAlign
Organism
44
Homo sapiens
4
Mus musculus
Biosample type
34
immortalized cell line
13
tissue
2
primary cell
Organ
6
embryonic structure
6
extraembryonic component
1
blood
1
brain
1
intestine
1
large intestine
1
placenta
Project
34
ENCODE
15
Roadmap
Genome assembly (visualization)
28
hg19
27
GRCh38
Audit category:
2
missing possible_controls
Audit category:
1472
insufficient read depth
880
control insufficient read depth
624
missing controlled_by
481
insufficient read length
310
unreplicated experiment
224
poor library complexity
213
severe bottlenecking
203
control low read depth
120
insufficient spot score
111
partially characterized antibody
83
missing possible_controls
68
missing RNA fragment size
49
missing documents
47
insufficient replicate concordance
27
antibody not characterized to standard
26
uncharacterized antibody
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
10
low read depth
10
missing spikeins
2
low read length
2
mild to moderate bottlenecking
1
low replicate concordance
1
moderate library complexity
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
MRE-seq
MeDIP-seq
shRNA RNA-seq
RRBS
immortalized cell line
HepG2
3
6
6
K562
6
5
2
CH12.LX
1
1
MCF-7
1
1
MEL cell line
1
1
tissue
chorionic villus
4
placental basal plate
2
trophoblast
2
cerebellum
1
chorion
1
+ See 3 more…
primary cell
CD8-positive, alpha-beta memory T cell
1
peripheral blood mononuclear cell
1
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