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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 67microRNA-seq
  • 1polyA mRNA RNA-seq
Assay category
  • 68Transcription
Date released
  • 68July, 2013
Organism
  • 68Homo sapiens
Biosample type
  • 35primary cell
  • 29tissue
  • 4stem cell
Organ
  • 15extraembryonic component
  • 11penis
  • 8embryonic structure
  • 7skin of body
  • 6mammary gland
  • 5brain
  • 3blood
  • 3connective tissue
  • 3placenta
  • 2pancreas
  • 1liver
Project
  • 68Roadmap
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

68 results

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microRNA-seq
polyA mRNA RNA-seq
primary cell
foreskin melanocyte5
cortex derived neurospheres4
ganglionic eminence derived neurospheres4
foreskin fibroblast3
foreskin keratinocyte3
tissue
chorion4
chorionic villus4
amnion3
placenta3
trophoblast3
stem cell
mammary stem cell2
H1-hESC1
UCSF-41
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