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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 118DNase-seq
  • 2genetic modification DNase-seq
Assay category
  • 120DNA accessibility
Date released
  • 56July, 2013
  • 11August, 2012
  • 10March, 2012
  • 9May, 2016
  • 4July, 2016
  • 4September, 2015
  • 3April, 2011
  • 3August, 2015
  • 3July, 2011
  • 3November, 2015
  • 3September, 2012
  • 2August, 2016
  • 2May, 2011
  • 2October, 2011
  • 1December, 2010
  • 1July, 2012
  • 1June, 2016
  • 1November, 2012
  • 1November, 2016
Available data
  • 120bam
  • 120bed narrowPeak
  • 120bigBed narrowPeak
  • 120fastq
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 64bigWig
  • 10tagAlign
  • 1tar
Organism
  • 103Homo sapiens
  • 17Mus musculus
Biosample type
  • 73tissue
  • 24immortalized cell line
  • 13primary cell
  • 4in vitro differentiated cells
  • 3induced pluripotent stem cell line
  • 3stem cell
Organ
  • 13kidney
  • 11muscle organ
  • 10brain
  • 10intestine
  • 7lung
  • 5connective tissue
  • 5large intestine
  • 5small intestine
  • 4thymus
  • 3heart
  • 3liver
  • 3ureter
  • 2extraembryonic component
  • 2gonad
  • 2placenta
  • 2skin of body
  • 1adipose tissue
  • 1adrenal gland
  • 1embryonic structure
  • 1pancreas
  • 1prostate gland
  • 1spinal cord
  • 1spleen
  • 1testis
Project
  • 64ENCODE
  • 56Roadmap
Genome assembly (visualization)
  • 83hg19
  • 82GRCh38
  • 17mm10
Audit category:
  • 24extremely low spot score
  • 1extremely low read depth
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 71insufficient read depth
  • 20low spot score
  • 7mixed read lengths
  • 5mixed run types
BIOSAMPLE
ASSAY

120 results

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Clear Filters
DNase-seq
genetic modification DNase-seq
tissue
large intestine5
muscle of arm5
small intestine5
right kidney4
thymus4
immortalized cell line
K56232
Ishikawa2
MCF-72
GM139771
GM200001
primary cell
T-cell3
CD4-positive helper T cell2
CD8-positive, alpha-beta T cell1
IMR-901
brain pericyte1
in vitro differentiated cells
hematopoietic multipotent progenitor cell2
adipocyte1
neural progenitor cell1
induced pluripotent stem cell line
CWRU11
L1-S81
L1-S8R1
stem cell
H92
H1-hESC1
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