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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
47
transcription factor
14
chromatin remodeller
6
RNA binding protein
4
recombinant protein
2
other post-translational modification
1
other context
Date released
17
July, 2011
6
August, 2012
4
March, 2012
3
December, 2016
3
February, 2012
3
June, 2011
2
April, 2012
2
October, 2011
1
December, 2014
1
July, 2014
1
July, 2016
1
June, 2016
1
March, 2014
1
September, 2011
1
September, 2012
Available data
46
bam
46
bigWig
46
fastq
45
bed narrowPeak
45
bigBed narrowPeak
29
bed broadPeak
29
bigBed broadPeak
1
bed bed9
1
bigBed bed9
Organism
38
Homo sapiens
9
Mus musculus
Biosample type
39
immortalized cell line
4
stem cell
3
tissue
1
primary cell
Organ
1
gonad
1
intestine
1
liver
1
small intestine
1
testis
Project
47
ENCODE
Genome assembly (visualization)
35
GRCh38
19
hg19
9
mm10
7
mm9
Audit category:
1
extremely low read length
Audit category:
1472
insufficient read depth
880
control insufficient read depth
624
missing controlled_by
481
insufficient read length
310
unreplicated experiment
224
poor library complexity
213
severe bottlenecking
203
control low read depth
120
insufficient spot score
111
partially characterized antibody
83
missing possible_controls
68
missing RNA fragment size
49
missing documents
47
insufficient replicate concordance
27
antibody not characterized to standard
26
uncharacterized antibody
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
41
low read length
34
low read depth
31
mild to moderate bottlenecking
20
moderate library complexity
16
control low read depth
14
inconsistent platforms
9
inconsistent control read length
7
mixed read lengths
5
inconsistent target of control experiment
4
mixed run types
3
inconsistent control run_type
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
immortalized cell line
K562
14
HepG2
5
CH12.LX
3
GM12878
3
MCF-7
3
+ See 10 more…
stem cell
H1-hESC
4
tissue
liver
1
small intestine
1
testis
1
primary cell
IMR-90
1
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