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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 2WGBS
Assay category
  • 2DNA methylation
  • 2DNA sequencing
Date released
  • 1March, 2016
  • 1October, 2015
Available data
  • 2bam
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigWig
  • 2fastq
Organism
  • 2Homo sapiens
Biosample type
  • 1immortalized cell line
  • 1stem cell
Project
  • 2ENCODE
Genome assembly (visualization)
  • 2GRCh38
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

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WGBS
immortalized cell line
K5621
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H1-hESC1
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