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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203ChIP-seq
Assay category
  • 203DNA binding
Target of assay
  • 111transcription factor
  • 92histone
  • 92histone modification
  • 74narrow histone mark
  • 22RNA binding protein
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 44July, 2011
  • 27March, 2012
  • 26July, 2013
  • 24February, 2011
  • 18October, 2011
  • 12April, 2012
  • 12August, 2012
  • 10March, 2011
  • 8November, 2011
  • 7June, 2011
  • 4June, 2014
  • 4September, 2012
  • 3February, 2012
  • 2May, 2012
  • 1March, 2016
  • 1November, 2016
Available data
  • 203bam
  • 203bigWig
  • 203fastq
  • 198bed narrowPeak
  • 197bigBed narrowPeak
  • 142bed broadPeak
  • 129bigBed broadPeak
  • 40tagAlign
  • 4tar
  • 2fasta
Organism
  • 126Homo sapiens
  • 77Mus musculus
Biosample type
  • 74immortalized cell line
  • 52tissue
  • 43primary cell
  • 28stem cell
  • 4in vitro differentiated cells
  • 2induced pluripotent stem cell line
Organ
  • 14brain
  • 11connective tissue
  • 11lung
  • 11skin of body
  • 9liver
  • 8bone element
  • 8heart
  • 4gonad
  • 4testis
  • 4thymus
  • 3spleen
  • 2kidney
  • 2mammary gland
Project
  • 177ENCODE
  • 26Roadmap
Genome assembly (visualization)
  • 98GRCh38
  • 80hg19
  • 74mm10
  • 62mm9
Audit category:
  • 18control extremely low read depth
  • 17extremely low read depth
  • 2extremely low read length
Audit category:
  • 1472insufficient read depth
  • 880control insufficient read depth
  • 624missing controlled_by
  • 481insufficient read length
  • 310unreplicated experiment
  • 224poor library complexity
  • 213severe bottlenecking
  • 203control low read depth
  • 120insufficient spot score
  • 111partially characterized antibody
  • 83missing possible_controls
  • 68missing RNA fragment size
  • 49missing documents
  • 47insufficient replicate concordance
  • 27antibody not characterized to standard
  • 26uncharacterized antibody
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 165low read length
  • 121mild to moderate bottlenecking
  • 117low read depth
  • 60moderate library complexity
  • 53control low read depth
  • 53inconsistent control read length
  • 43inconsistent platforms
  • 21mixed read lengths
  • 20borderline replicate concordance
  • 2inconsistent control run_type
  • 2mixed run types
BIOSAMPLE
ASSAY

203 results

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Clear Filters
ChIP-seq
immortalized cell line
K56228
GM1287820
MEL cell line8
C2C124
HeLa-S33
tissue
liver9
heart8
bone marrow4
cerebellum4
cortical plate4
primary cell
keratinocyte9
skeletal muscle myoblast8
fibroblast of lung7
IMR-906
CD14-positive monocyte5
stem cell
H1-hESC17
ES-Bruce46
ES-E143
H7-hESC2
in vitro differentiated cells
myocyte4
induced pluripotent stem cell line
iPS DF 19.112
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