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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
4
RIP-seq
Assay category
23
DNA binding
4
RNA binding
Target of assay
16
transcription factor
9
chromatin remodeller
8
RNA binding protein
8
histone
8
histone modification
5
narrow histone mark
3
broad histone mark
Date released
8
July, 2014
6
January, 2017
5
May, 2016
3
November, 2016
1
December, 2016
1
February, 2017
1
July, 2016
1
June, 2016
1
September, 2014
Available data
24
fastq
19
bam
15
bed narrowPeak
15
bigBed narrowPeak
15
bigWig
4
tsv
Organism
27
Homo sapiens
Biosample type
19
immortalized cell line
3
stem cell
2
in vitro differentiated cells
2
induced pluripotent stem cell line
1
tissue
Organ
1
liver
Project
27
ENCODE
Genome assembly (visualization)
14
GRCh38
14
hg19
Audit category:
1472
insufficient read depth
880
control insufficient read depth
624
missing controlled_by
481
insufficient read length
310
unreplicated experiment
224
poor library complexity
213
severe bottlenecking
203
control low read depth
120
insufficient spot score
111
partially characterized antibody
83
missing possible_controls
68
missing RNA fragment size
49
missing documents
47
insufficient replicate concordance
27
antibody not characterized to standard
26
uncharacterized antibody
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
13
low read depth
12
mild to moderate bottlenecking
9
low read length
6
borderline replicate concordance
6
inconsistent control read length
4
mixed read lengths
4
moderate library complexity
3
inconsistent control run_type
1
control low read depth
1
inconsistent platforms
1
mixed run types
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
RIP-seq
immortalized cell line
K562
5
4
GM12878
3
HepG2
3
A549
1
KMS-11
1
+ See 2 more…
stem cell
H1-hESC
2
H9
1
in vitro differentiated cells
mid-neurogenesis radial glial cells
1
radial glial cell
1
induced pluripotent stem cell line
induced pluripotent stem cell
2
tissue
liver
1
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