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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 2shRNA RNA-seq
  • 1ChIP-seq
Assay category
  • 2Transcription
  • 1DNA binding
Target of assay
  • 2RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 2June, 2014
  • 1January, 2017
Available data
  • 3bam
  • 3fastq
  • 2bigWig
  • 2tsv
Organism
  • 3Homo sapiens
Biosample type
  • 2immortalized cell line
  • 1tissue
Organ
  • 1skin of body
Project
  • 3ENCODE
Genome assembly (visualization)
  • 2GRCh38
  • 2hg19
Audit category:
  • 244extremely low spot score
  • 89extremely low read depth
  • 69control extremely low read depth
  • 15extremely low read length
  • 3missing possible_controls
  • 2multiple paired_with
  • 1inconsistent control
  • 1missing donor
Audit category:
  • 3missing controlled_by
  • 2missing documents
  • 0missing possible_controls
BIOSAMPLE
ASSAY

3 results

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shRNA RNA-seq
ChIP-seq
immortalized cell line
K5622
tissue
lower leg skin1
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