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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 244DNase-seq
Assay category
  • 244DNA accessibility
Date released
  • 133July, 2013
  • 22May, 2016
  • 20March, 2012
  • 15August, 2012
  • 10April, 2011
  • 8August, 2015
  • 4July, 2012
  • 4September, 2012
  • 4September, 2015
  • 3April, 2013
  • 3July, 2011
  • 3November, 2015
  • 3October, 2015
  • 2August, 2016
  • 2May, 2011
  • 2November, 2012
  • 2October, 2011
  • 1February, 2013
  • 1June, 2016
  • 1May, 2013
  • 1September, 2016
Available data
  • 244bam
  • 244bed narrowPeak
  • 244bigBed narrowPeak
  • 240fastq
  • 205bed broadPeak
  • 205bigBed broadPeak
  • 111bigWig
  • 30tagAlign
  • 1tar
Organism
  • 220Homo sapiens
  • 24Mus musculus
Biosample type
  • 165tissue
  • 31immortalized cell line
  • 24primary cell
  • 9in vitro differentiated cells
  • 9stem cell
  • 6induced pluripotent stem cell line
Organ
  • 36kidney
  • 22muscle organ
  • 16intestine
  • 16stomach
  • 12brain
  • 11large intestine
  • 11ureter
  • 8adrenal gland
  • 7heart
  • 7thymus
  • 6embryonic structure
  • 6gonad
  • 6lung
  • 5small intestine
  • 4connective tissue
  • 4extraembryonic component
  • 4spinal cord
  • 3liver
  • 3ovary
  • 3pancreas
  • 3placenta
  • 2adipose tissue
  • 2blood vessel
  • 2skin of body
  • 2testis
  • 2thyroid gland
  • 1artery
  • 1eye
  • 1mouth
  • 1prostate gland
  • 1spleen
  • 1tongue
  • 1urinary bladder
  • 1uterus
Project
  • 133Roadmap
  • 111ENCODE
Genome assembly (visualization)
  • 181GRCh38
  • 181hg19
  • 24mm10
Audit category:
  • 244extremely low spot score
  • 89extremely low read depth
  • 69control extremely low read depth
  • 15extremely low read length
  • 3missing possible_controls
  • 2multiple paired_with
  • 1inconsistent control
  • 1missing donor
Audit category:
  • 24insufficient spot score
  • 4unreplicated experiment
  • 1insufficient read length
Audit category:
  • 166insufficient read depth
  • 19low spot score
  • 15mixed read lengths
  • 8mixed run types
BIOSAMPLE
ASSAY

244 results

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Clear Filters
DNase-seq
tissue
stomach16
large intestine10
muscle of arm9
adrenal gland8
heart7
immortalized cell line
K5624
MCF-74
Ishikawa3
MEL cell line2
T47D2
primary cell
B cell2
CD8-positive, alpha-beta T cell2
T-helper 1 cell2
naive thymus-derived CD4-positive, alpha-beta T cell2
natural killer cell2
in vitro differentiated cells
hematopoietic multipotent progenitor cell3
cardiac mesoderm2
acute myeloid leukemia1
hepatocyte1
neuronal stem cell1
stem cell
H93
ES-E141
H1-hESC1
WW61
ZHBTc4-mESC1
induced pluripotent stem cell line
induced pluripotent stem cell2
CWRU11
iPS DF 19.71
iPS DF 4.71
iPS DF 6.91
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