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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
7
transcription factor
6
control
2
chromatin remodeller
2
histone
2
histone modification
1
RNA binding protein
1
broad histone mark
1
narrow histone mark
Date released
8
July, 2011
3
February, 2011
2
October, 2011
1
March, 2012
1
March, 2017
Available data
15
bam
15
bigWig
15
fastq
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
3
tagAlign
Organism
15
Homo sapiens
Biosample type
15
immortalized cell line
Project
15
ENCODE
Genome assembly (visualization)
6
hg19
5
GRCh38
Audit category:
244
extremely low spot score
89
extremely low read depth
69
control extremely low read depth
15
extremely low read length
3
missing possible_controls
2
multiple paired_with
1
inconsistent control
1
missing donor
Audit category:
9
insufficient read depth
3
insufficient read length
2
control low read depth
2
missing controlled_by
1
insufficient replicate concordance
1
uncharacterized antibody
Audit category:
10
mixed read lengths
8
low read length
7
low read depth
6
inconsistent control read length
6
inconsistent platforms
5
mild to moderate bottlenecking
4
control low read depth
4
moderate library complexity
3
borderline replicate concordance
2
mixed run types
1
inconsistent control run_type
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
immortalized cell line
GM12878
3
HepG2
3
K562
3
PFSK-1
2
SK-N-MC
2
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