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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80ChIP-seq
  • 9DNase-seq
Assay category
  • 80DNA binding
  • 9DNA accessibility
Target of assay
  • 57histone
  • 57histone modification
  • 30narrow histone mark
  • 26broad histone mark
  • 12transcription factor
  • 11control
  • 5RNA binding protein
  • 1chromatin remodeller
Date released
  • 27February, 2011
  • 26July, 2013
  • 8October, 2011
  • 4August, 2012
  • 4July, 2011
  • 4March, 2012
  • 3April, 2012
  • 3June, 2011
  • 2January, 2012
  • 2July, 2014
  • 2May, 2016
  • 1July, 2012
  • 1June, 2016
  • 1May, 2013
Available data
  • 88fastq
  • 82bam
  • 72bigWig
  • 53bed broadPeak
  • 51bed narrowPeak
  • 49bigBed broadPeak
  • 49bigBed narrowPeak
  • 44tagAlign
Organism
  • 78Homo sapiens
  • 11Mus musculus
Biosample type
  • 30primary cell
  • 22immortalized cell line
  • 15tissue
  • 12stem cell
  • 7in vitro differentiated cells
  • 3induced pluripotent stem cell line
Organ
  • 13skin of body
  • 9lung
  • 8connective tissue
  • 5blood vessel
  • 5vein
  • 3embryonic structure
  • 2brain
  • 2spleen
  • 1adipose tissue
  • 1intestine
  • 1liver
  • 1mammary gland
  • 1muscle organ
  • 1small intestine
  • 1thymus
Project
  • 63ENCODE
  • 26Roadmap
Genome assembly (visualization)
  • 38hg19
  • 32GRCh38
  • 9mm9
  • 7mm10
Audit category:
  • 244extremely low spot score
  • 89extremely low read depth
  • 69control extremely low read depth
  • 15extremely low read length
  • 3missing possible_controls
  • 2multiple paired_with
  • 1inconsistent control
  • 1missing donor
Audit category:
  • 47insufficient read depth
  • 21control insufficient read depth
  • 17control low read depth
  • 16poor library complexity
  • 16severe bottlenecking
  • 15insufficient read length
  • 14missing controlled_by
  • 1insufficient spot score
  • 1missing possible_controls
  • 1uncharacterized antibody
Audit category:
  • 66low read length
  • 45mild to moderate bottlenecking
  • 19moderate library complexity
  • 18inconsistent platforms
  • 17control low read depth
  • 14inconsistent control read length
  • 10low read depth
  • 7mixed read lengths
  • 4low spot score
  • 3borderline replicate concordance
  • 1inconsistent target of control experiment
  • 1insufficient read depth
BIOSAMPLE
ASSAY

89 results

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Clear Filters
ChIP-seq
DNase-seq
primary cell
keratinocyte10
endothelial cell of umbilical vein5
fibroblast of lung4
common myeloid progenitor, CD34-positive21
fibroblast of dermis3
immortalized cell line
HepG25
K5624
HEK2932
A5491
CH12.LX1
tissue
lung3
left lung2
limb2
spleen2
brain1
stem cell
H1-hESC7
H93
ES-I31
H7-hESC1
in vitro differentiated cells
mesodermal cell2
HUES64-derived CD184+1
ectodermal cell1
hepatocyte1
neuroepithelial stem cell1
induced pluripotent stem cell line
iPS-18c3
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