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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
Assay category
69
DNA binding
Target of assay
60
histone
60
histone modification
32
broad histone mark
28
narrow histone mark
9
transcription factor
5
RNA binding protein
4
chromatin remodeller
Date released
27
February, 2011
22
March, 2012
7
September, 2012
4
June, 2011
2
April, 2012
2
August, 2012
2
July, 2011
1
July, 2013
1
March, 2016
1
November, 2016
Available data
69
bam
69
bigWig
69
fastq
65
bed broadPeak
65
bed narrowPeak
65
bigBed broadPeak
64
bigBed narrowPeak
34
tagAlign
Organism
41
Homo sapiens
28
Mus musculus
Biosample type
39
primary cell
28
tissue
1
immortalized cell line
1
stem cell
Organ
27
connective tissue
18
lung
13
skin of body
6
brain
5
gonad
5
kidney
5
testis
3
extraembryonic component
3
placenta
Project
68
ENCODE
1
Roadmap
Genome assembly (visualization)
37
hg19
35
GRCh38
28
mm9
26
mm10
Audit category:
244
extremely low spot score
89
extremely low read depth
69
control extremely low read depth
15
extremely low read length
3
missing possible_controls
2
multiple paired_with
1
inconsistent control
1
missing donor
Audit category:
58
insufficient read depth
31
control insufficient read depth
18
control low read depth
8
missing controlled_by
6
insufficient read length
3
poor library complexity
3
severe bottlenecking
Audit category:
65
low read length
37
mild to moderate bottlenecking
31
inconsistent platforms
18
low read depth
15
inconsistent control read length
14
moderate library complexity
10
control low read depth
7
mixed read lengths
3
borderline replicate concordance
1
inconsistent control run_type
1
mixed run types
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
primary cell
fibroblast of lung
14
fibroblast of dermis
13
skeletal muscle myoblast
12
tissue
brain
6
kidney
5
limb
5
testis
5
lung
4
+ See 1 more…
immortalized cell line
GM13976
1
stem cell
H1-hESC
1
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