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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
Assay category
  • 69DNA binding
Target of assay
  • 60histone
  • 60histone modification
  • 32broad histone mark
  • 28narrow histone mark
  • 9transcription factor
  • 5RNA binding protein
  • 4chromatin remodeller
Date released
  • 27February, 2011
  • 22March, 2012
  • 7September, 2012
  • 4June, 2011
  • 2April, 2012
  • 2August, 2012
  • 2July, 2011
  • 1July, 2013
  • 1March, 2016
  • 1November, 2016
Available data
  • 69bam
  • 69bigWig
  • 69fastq
  • 65bed broadPeak
  • 65bed narrowPeak
  • 65bigBed broadPeak
  • 64bigBed narrowPeak
  • 34tagAlign
Organism
  • 41Homo sapiens
  • 28Mus musculus
Biosample type
  • 39primary cell
  • 28tissue
  • 1immortalized cell line
  • 1stem cell
Organ
  • 27connective tissue
  • 18lung
  • 13skin of body
  • 6brain
  • 5gonad
  • 5kidney
  • 5testis
  • 3extraembryonic component
  • 3placenta
Project
  • 68ENCODE
  • 1Roadmap
Genome assembly (visualization)
  • 37hg19
  • 35GRCh38
  • 28mm9
  • 26mm10
Audit category:
  • 244extremely low spot score
  • 89extremely low read depth
  • 69control extremely low read depth
  • 15extremely low read length
  • 3missing possible_controls
  • 2multiple paired_with
  • 1inconsistent control
  • 1missing donor
Audit category:
  • 58insufficient read depth
  • 31control insufficient read depth
  • 18control low read depth
  • 8missing controlled_by
  • 6insufficient read length
  • 3poor library complexity
  • 3severe bottlenecking
Audit category:
  • 65low read length
  • 37mild to moderate bottlenecking
  • 31inconsistent platforms
  • 18low read depth
  • 15inconsistent control read length
  • 14moderate library complexity
  • 10control low read depth
  • 7mixed read lengths
  • 3borderline replicate concordance
  • 1inconsistent control run_type
  • 1mixed run types
BIOSAMPLE
ASSAY

69 results

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Clear Filters
ChIP-seq
primary cell
fibroblast of lung14
fibroblast of dermis13
skeletal muscle myoblast12
tissue
brain6
kidney5
limb5
testis5
lung4
immortalized cell line
GM139761
stem cell
H1-hESC1
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