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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 330ChIP-seq
  • 18Repli-chip
  • 2DNase-seq
Assay category
  • 330DNA binding
  • 18Replication timing
  • 2DNA accessibility
Target of assay
  • 154transcription factor
  • 119histone
  • 119histone modification
  • 63broad histone mark
  • 57control
  • 53narrow histone mark
  • 23chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1RNA binding protein
Date released
  • 58March, 2012
  • 44August, 2012
  • 41November, 2011
  • 40September, 2011
  • 29July, 2011
  • 25September, 2012
  • 24June, 2011
  • 22April, 2012
  • 18July, 2012
  • 16June, 2012
  • 13December, 2014
  • 7February, 2014
  • 5February, 2011
  • 4March, 2014
  • 3February, 2012
  • 1May, 2012
Available data
  • 350bigWig
  • 332bam
  • 332fastq
  • 264bed narrowPeak
  • 264bigBed narrowPeak
  • 142bed broadPeak
  • 142bigBed broadPeak
  • 18tar
  • 2fasta
  • 1bed bed9
  • 1bigBed bed9
Organism
  • 349Mus musculus
Biosample type
  • 151immortalized cell line
  • 121tissue
  • 34in vitro differentiated cells
  • 33stem cell
  • 11primary cell
Organ
  • 27brain
  • 15heart
  • 14liver
  • 11connective tissue
  • 8bone element
  • 8gonad
  • 8intestine
  • 8kidney
  • 8small intestine
  • 8spleen
  • 8testis
  • 8thymus
  • 5lung
  • 4adipose tissue
  • 4embryonic structure
  • 4extraembryonic component
  • 4placenta
  • 2skin of body
Project
  • 350ENCODE
Genome assembly (visualization)
  • 5863hg19
  • 5455GRCh38
  • 1482mm10
  • 602dm3
  • 496dm6
  • 350mm9
  • 282ce10
  • 280ce11
  • 2mm10-minimal
Audit category:
  • 28control extremely low read depth
  • 9extremely low read depth
Audit category:
  • 162insufficient read depth
  • 63missing controlled_by
  • 62control low read depth
  • 59control insufficient read depth
  • 38insufficient read length
  • 23poor library complexity
  • 16severe bottlenecking
  • 7insufficient replicate concordance
Audit category:
  • 274low read length
  • 176mild to moderate bottlenecking
  • 173low read depth
  • 137inconsistent platforms
  • 98control low read depth
  • 80moderate library complexity
  • 79inconsistent target of control experiment
  • 42inconsistent control read length
  • 26mixed read lengths
  • 21borderline replicate concordance
BIOSAMPLE
ASSAY

350 results

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Clear Filters
ChIP-seq
Repli-chip
DNase-seq
immortalized cell line
MEL cell line681
CH12.LX471
C2C1216
G1E-ER4131
G1E11
tissue
heart15
liver14
brain9
kidney8
small intestine8
in vitro differentiated cells
myocyte26
epiblast cell2
ectodermal cell1
endodermal cell1
mesodermal cell1
stem cell
ES-Bruce410
E14TG2a.49
ES-E149
stem cell of epidermis2
46C1
primary cell
embryonic fibroblast61
bone marrow macrophage1
erythroblast1
megakaryocyte1
splenic B cell1
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