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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 906ChIP-seq
  • 113total RNA-seq
  • 86polyA mRNA RNA-seq
  • 77microRNA counts
  • 72WGBS
  • 71single cell RNA-seq
  • 65microRNA-seq
  • 60DNase-seq
  • 32ATAC-seq
Assay category
  • 906DNA binding
  • 412Transcription
  • 92DNA accessibility
  • 72DNA methylation
  • 72DNA sequencing
Target of assay
  • 728histone
  • 728histone modification
  • 382broad histone mark
  • 343narrow histone mark
  • 178transcription factor
  • 23chromatin remodeller
  • 18control
  • 6other context
  • 6other post-translational modification
  • 1RNA binding protein
Date released
  • 229June, 2014
  • 136March, 2016
  • 114December, 2014
  • 101November, 2015
  • 98October, 2015
  • 83June, 2015
  • 66February, 2016
  • 60March, 2012
  • 53August, 2012
  • 53September, 2012
  • 37January, 2017
  • 37July, 2016
  • 36April, 2012
  • 34November, 2011
  • 33September, 2011
  • 29February, 2012
  • 28May, 2016
  • 27July, 2011
  • 27May, 2017
  • 21June, 2012
  • 20January, 2016
  • 20June, 2011
  • 18September, 2014
  • 16May, 2012
  • 16September, 2015
  • 10August, 2011
  • 10November, 2014
  • 8April, 2016
  • 8August, 2015
  • 7October, 2016
  • 6April, 2013
  • 6August, 2016
  • 6February, 2014
  • 6November, 2012
  • 5February, 2011
  • 3January, 2015
  • 3July, 2014
  • 3March, 2014
  • 2December, 2015
  • 2May, 2013
  • 1February, 2013
  • 1February, 2017
  • 1July, 2015
  • 1June, 2017
  • 1November, 2016
Available data
  • 1405bam
  • 1405bigWig
  • 1405fastq
  • 998bed narrowPeak
  • 998bigBed narrowPeak
  • 335tsv
  • 251bed broadPeak
  • 251bigBed broadPeak
  • 77bed bed6+
  • 77bigBed bed6+
  • 77rcc
  • 72bed bedMethyl
  • 72bigBed bedMethyl
  • 30bed bedRnaElements
  • 30bigBed bedRnaElements
  • 13gtf
  • 4bigBed bed3+
  • 3fasta
  • 3tar
  • 1bed bed9
  • 1bigBed bed9
Organism
  • 1482Mus musculus
Biosample type
  • 1115tissue
  • 182immortalized cell line
  • 112primary cell
  • 40stem cell
  • 33in vitro differentiated cells
Organ
  • 388brain
  • 137embryonic structure
  • 116liver
  • 115heart
  • 65intestine
  • 61kidney
  • 61lung
  • 52stomach
  • 25bone element
  • 17connective tissue
  • 14gonad
  • 14thymus
  • 12spleen
  • 10small intestine
  • 10testis
  • 9adipose tissue
  • 6muscle organ
  • 5extraembryonic component
  • 5placenta
  • 4adrenal gland
  • 4eye
  • 4large intestine
  • 4urinary bladder
  • 2ovary
  • 1mammary gland
  • 1pancreas
Project
  • 1477ENCODE
  • 5GGR
Genome assembly (visualization)
  • 5863hg19
  • 5455GRCh38
  • 1482mm10
  • 602dm3
  • 496dm6
  • 350mm9
  • 282ce10
  • 280ce11
  • 2mm10-minimal
Audit category:
  • 26control extremely low read depth
  • 24extremely low spot score
  • 7extremely low read depth
Audit category:
  • 315control insufficient read depth
  • 303insufficient read depth
  • 74control low read depth
  • 62missing controlled_by
  • 54insufficient read length
  • 39poor library complexity
  • 34severe bottlenecking
  • 17insufficient spot score
  • 9insufficient replicate concordance
  • 2unreplicated experiment
Audit category:
  • 532low read length
  • 490mild to moderate bottlenecking
  • 332inconsistent platforms
  • 303low read depth
  • 258control low read depth
  • 249inconsistent control read length
  • 218moderate library complexity
  • 161mixed read lengths
  • 84inconsistent target of control experiment
  • 35antibody characterized with exemption
  • 32insufficient read depth
  • 30low replicate concordance
  • 27low spot score
  • 26borderline replicate concordance
  • 26missing spikeins
  • 6mixed run types
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

1482 results

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Clear Filters
ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
microRNA counts
WGBS
single cell RNA-seq
microRNA-seq
DNase-seq
ATAC-seq
tissue
liver7387772633
heart779488171
forebrain639882727
hindbrain639881635
midbrain639881634
immortalized cell line
MEL cell line66232
CH12.LX52211
G1E-ER41027
G1E1022
C2C12121
primary cell
Purkinje cell39
pyramidal neuron20
erythroblast6211
megakaryocyte6211
bone marrow macrophage51
stem cell
ES-E141311
ES-Bruce4101
E14TG2a.48
WW62
hematopoietic stem cell2
in vitro differentiated cells
myocyte221
dendritic cell5
erythroblast2
acute myeloid leukemia1
adipocyte1
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