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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 211Transcription
Date released
  • 58July, 2012
  • 38March, 2014
  • 33May, 2016
  • 23February, 2012
  • 17June, 2014
  • 10December, 2014
  • 9June, 2016
  • 8August, 2016
  • 6November, 2010
  • 6November, 2014
  • 2July, 2014
  • 1January, 2015
Available data
  • 209fastq
  • 171bam
  • 171bigWig
  • 171tsv
  • 85bed bedRnaElements
  • 85bigBed bedRnaElements
  • 85gtf
Organism
  • 173Homo sapiens
  • 38Drosophila melanogaster
Biosample type
  • 95immortalized cell line
  • 68tissue
  • 33primary cell
  • 8in vitro differentiated cells
  • 6stem cell
  • 1induced pluripotent stem cell line
Organ
  • 16connective tissue
  • 10intestine
  • 10skin of body
  • 9muscle organ
  • 8large intestine
  • 8stomach
  • 7esophagus
  • 6lung
  • 4blood vessel
  • 4liver
  • 4spleen
  • 3adipose tissue
  • 3brain
  • 3extraembryonic component
  • 3gonad
  • 3prostate gland
  • 2adrenal gland
  • 2pancreas
  • 2placenta
  • 2testis
  • 2thyroid gland
  • 2uterus
  • 2vein
  • 1artery
  • 1bone element
  • 1heart
  • 1kidney
  • 1mammary gland
  • 1mouth
  • 1ovary
  • 1penis
  • 1spinal cord
  • 1tongue
  • 1urinary bladder
  • 1vagina
Project
  • 173ENCODE
  • 38modENCODE
Genome assembly (visualization)
  • 171GRCh38
  • 171hg19
Audit category:
  • 27insufficient read length
  • 7insufficient read depth
  • 2unreplicated experiment
Audit category:
  • 38low replicate concordance
  • 27low read depth
  • 24missing external identifiers
  • 8missing genotype
BIOSAMPLE
ASSAY

211 results

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Clear Filters
small RNA-seq
immortalized cell line
SK-N-SH10
A5499
CME-W1-Cl.8+8
K5628
Kc1678
tissue
esophagus squamous epithelium4
gastroesophageal sphincter4
sigmoid colon4
spleen4
stomach4
primary cell
IMR-909
keratinocyte3
melanocyte of skin2
B cell1
CD14-positive monocyte1
in vitro differentiated cells
neural cell3
bipolar neuron1
hematopoietic multipotent progenitor cell1
hepatocyte1
neural progenitor cell1
stem cell
H1-hESC3
mesenchymal stem cell of Wharton's jelly1
mesenchymal stem cell of adipose1
mesenchymal stem cell of the bone marrow1
induced pluripotent stem cell line
induced pluripotent stem cell1
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