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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 112Transcription
Target of assay
  • 29control
Date released
  • 58October, 2015
  • 26July, 2014
  • 12June, 2014
  • 12September, 2014
  • 3December, 2014
  • 1July, 2015
Available data
  • 112bam
  • 112bigWig
  • 112fastq
  • 112tsv
Organism
  • 71Mus musculus
  • 41Homo sapiens
Biosample type
  • 85primary cell
  • 13immortalized cell line
  • 12tissue
  • 1in vitro differentiated cells
  • 1induced pluripotent stem cell line
Organ
  • 70brain
  • 2liver
  • 1heart
  • 1muscle organ
  • 1thymus
Project
  • 112ENCODE
Genome assembly (visualization)
  • 71mm10
  • 41GRCh38
  • 41hg19
BIOSAMPLE
ASSAY

112 results

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Clear Filters
single cell RNA-seq
primary cell
Purkinje cell61
pyramidal neuron22
cerebellar granule cell2
immortalized cell line
GM1287813
tissue
cerebellar granule layer2
forebrain2
liver2
cerebral cortex, layer 51
heart1
in vitro differentiated cells
bipolar neuron1
induced pluripotent stem cell line
induced pluripotent stem cell1
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