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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 109Transcription
Target of assay
  • 63RNA binding protein
  • 34transcription factor
  • 18control
  • 2chromatin remodeller
Date released
  • 59March, 2014
  • 40October, 2016
  • 6January, 2017
  • 4November, 2016
Available data
  • 109fastq
  • 59sam
  • 59wig
  • 50bam
  • 50bigWig
  • 50tsv
Organism
  • 59Drosophila melanogaster
  • 50Homo sapiens
Biosample type
  • 109immortalized cell line
Project
  • 59modENCODE
  • 50ENCODE
Genome assembly (visualization)
  • 50GRCh38
Audit category:
  • 57missing controlled_by
  • 57missing possible_controls
Audit category:
  • 50missing spikeins
  • 4low replicate concordance
BIOSAMPLE
ASSAY

109 results

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