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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    9175
  • DNase-seq
    863
  • polyA RNA-seq
    831
  • shRNA RNA-seq
    526
  • total RNA-seq
    489
  • eCLIP
    462
  • RNA microarray
    291
  • DNAme array
    257
  • WGBS
    254
  • RRBS
    218
  • small RNA-seq
    216
  • microRNA-seq
    187
  • ATAC-seq
    180
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    161
  • genotyping array
    142
  • single cell RNA-seq
    137
  • CAGE
    121
  • Repli-seq
    119
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • CRISPRi RNA-seq
    77
  • RIP-seq
    73
  • MRE-seq
    68
  • Repli-chip
    63
  • ChIA-PET
    62
  • Hi-C
    55
  • MeDIP-seq
    55
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • CRISPR RNA-seq
    27
  • whole genome sequencing assay
    21
  • genotyping HTS
    15
  • MS-MS
    14
  • 5C
    13
  • TAB-seq
    8
  • iCLIP
    7
  • DNA-PET
    6
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • Transcription
    526
Target of assay
  • RNA binding protein
    474
  • transcription factor
    85
  • control
    52
Date released
  • August, 2015
    88
  • October, 2014
    85
  • December, 2014
    78
  • March, 2016
    64
  • November, 2014
    57
  • September, 2016
    32
  • June, 2016
    29
  • June, 2014
    25
  • February, 2016
    24
  • January, 2016
    24
  • January, 2017
    17
  • December, 2017
  • August, 2016
    3
Available data
  • bam
    524
  • bigWig
    524
  • fastq
    524
  • tsv
    524
  • tar
    436
Experiment status
  • released
    516
  • archived
    8
  • revoked
    2
Organism
  • Homo sapiens
    526
Biosample type
  • cell line
    526
Organ
  • blood
    272
  • bodily fluid
    272
  • liver
    254
Cell
  • cancer cell
    526
  • epithelial cell
    254
Project
  • ENCODE
    526
Genome assembly
  • GRCh38
    516
  • hg19
    516
Lab
  • Brenton Graveley, UConn
    526
Audit category:
  • missing possible_controls
    2
Audit category:
  • missing controlled_by
    2
  • missing documents
    2
Audit category:
  • missing analysis_step_run
    1
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

526 results

Clear Filters
shRNA RNA-seq
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