ENCODE
    • Matrix
    • Search
    • Summary
    • Search by region
    • Reference epigenomes
    • Publications
    • About
    • Visualize (SCREEN)
    • Matrix
    • Search
    • Methods
    • Antibodies
    • Biosamples
    • Genome references
    • Standards and guidelines
    • Ontologies
    • File formats
    • Software tools
    • Pipelines
    • Release policy
    • Data access
    • Schemas
    • Getting started
    • Tutorials
    • REST API
    • Cart
    • Project overview
    • Acknowledgements
    • Contact
    • News
    • Citing ENCODE

Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    3728
  • polyA RNA-seq
    459
  • RNA microarray
    291
  • total RNA-seq
    265
  • DNAme array
    257
  • RRBS
    218
  • WGBS
    162
  • RNA Bind-n-Seq
    161
  • DNase-seq
    153
  • genotyping array
    142
  • single cell RNA-seq
    130
  • Repli-seq
    119
  • ATAC-seq
    114
  • microRNA-seq
    82
  • microRNA counts
    77
  • RIP-seq
    73
  • MRE-seq
    68
  • Repli-chip
    63
  • ChIA-PET
    62
  • siRNA RNA-seq
    59
  • MeDIP-seq
    55
  • CAGE
    53
  • small RNA-seq
    40
  • Hi-C
    38
  • FAIRE-seq
    37
  • PAS-seq
    34
  • RIP-chip
    32
  • RNA-PET
    31
  • whole genome sequencing assay
    21
  • MS-MS
    14
  • 5C
    13
  • eCLIP
    10
  • shRNA RNA-seq
    10
  • TAB-seq
    8
  • genotyping HTS
    8
  • iCLIP
    7
  • DNA-PET
    6
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
  • RAMPAGE
    1
Assay category
  • Transcription
    10
Target of assay
  • RNA binding protein
    10
  • transcription factor
    3
Date released
  • December, 2014
    3
  • October, 2014
    3
  • June, 2014
    2
  • November, 2014
    2
Available data
  • bam
    8
  • bigWig
    8
  • fastq
    8
  • tsv
    8
Experiment status
  • archived
    8
  • revoked
    2
Organism
  • Homo sapiens
    10
Biosample type
  • cell line
    10
Organ
  • blood
    8
  • bodily fluid
    8
  • liver
    2
Cell
  • cancer cell
    10
  • epithelial cell
    2
Project
  • ENCODE
    10
Genome assembly
  • GRCh38
  • hg19
    523
Lab
  • Brenton Graveley, UConn
    10
Audit category:
  • missing possible_controls
    2
Audit category:
  • missing controlled_by
    2
  • missing documents
    2
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

10 results

Clear Filters
shRNA RNA-seq
cell line
K5628
HepG22
  • Citing ENCODE
  • Privacy
  • Contact
  • Submitter sign-in
  • ENCODE
  • Stanford University

©2019 Stanford University