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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    9242
  • DNase-seq
    880
  • polyA RNA-seq
    831
  • shRNA RNA-seq
    533
  • total RNA-seq
    491
  • eCLIP
    469
  • RNA microarray
    291
  • WGBS
    268
  • DNAme array
    257
  • RRBS
    218
  • small RNA-seq
    216
  • microRNA-seq
    187
  • ATAC-seq
    180
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    161
  • genotyping array
    142
  • single cell RNA-seq
    137
  • CAGE
    121
  • Repli-seq
    119
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • CRISPRi RNA-seq
    77
  • RIP-seq
    73
  • MRE-seq
    68
  • Repli-chip
    63
  • ChIA-PET
    62
  • Hi-C
    55
  • MeDIP-seq
    55
  • CRISPR RNA-seq
    50
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • whole genome sequencing assay
    21
  • genotyping HTS
    17
  • MS-MS
    14
  • 5C
    13
  • TAB-seq
    8
  • iCLIP
    7
  • DNA-PET
    6
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • Transcription
    533
  • Genotyping
    17
Target of assay
  • RNA binding protein
    478
  • transcription factor
    86
  • control
    55
Date released
  • August, 2015
    88
  • October, 2014
    85
  • December, 2014
    78
  • March, 2016
    64
  • November, 2014
    57
  • September, 2016
    32
  • June, 2016
    29
  • June, 2014
    25
  • February, 2016
    24
  • January, 2016
    24
  • January, 2017
    17
  • December, 2017
    9
  • April, 2016
    5
  • August, 2017
    4
  • October, 2016
    4
  • August, 2016
    3
  • January, 2018
    1
  • October, 2018
    1
Available data
  • fastq
    548
  • bam
    547
  • bigWig
    531
  • tsv
    531
  • tar
    440
  • vcf
    16
Experiment status
  • released
    536
  • archived
    12
  • revoked
    2
Organism
  • Homo sapiens
    550
Biosample type
  • cell line
    538
  • tissue
    12
Organ
  • blood
    279
  • bodily fluid
    279
  • liver
    257
  • intestine
    12
  • large intestine
    12
  • connective tissue
    2
  • limb
    2
  • skin of body
    2
Cell
  • cancer cell
    536
  • epithelial cell
    257
  • fibroblast
    2
Project
  • ENCODE
    547
  • community
    3
Genome assembly
  • GRCh38
    532
  • hg19
    526
Lab
  • Brenton Graveley, UConn
    533
  • Thomas Gingeras, CSHL
    14
  • Alexander Urban, Stanford
    3
Audit category:
  • missing possible_controls
    2
Audit category:
  • missing documents
    3
  • missing controlled_by
    2
  • unreplicated experiment
    2
Audit category:
  • inconsistent platforms
    3
  • missing analysis_step_run
    1
BIOSAMPLE
ASSAY

550 results

Clear Filters
shRNA RNA-seq
genotyping HTS
cell line
K5622763
HepG2257
GM232482
tissue
transverse colon12
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