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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    9242
  • DNase-seq
    880
  • polyA RNA-seq
    831
  • shRNA RNA-seq
    533
  • total RNA-seq
    491
  • eCLIP
    469
  • RNA microarray
    291
  • WGBS
    268
  • DNAme array
    257
  • RRBS
    218
  • small RNA-seq
    216
  • microRNA-seq
    187
  • ATAC-seq
    180
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    161
  • genotyping array
    142
  • single cell RNA-seq
    137
  • CAGE
    121
  • Repli-seq
    119
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • CRISPRi RNA-seq
    77
  • RIP-seq
    73
  • MRE-seq
    68
  • Repli-chip
    63
  • ChIA-PET
    62
  • Hi-C
    55
  • MeDIP-seq
    55
  • CRISPR RNA-seq
    50
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • whole genome sequencing assay
    21
  • genotyping HTS
    17
  • MS-MS
    14
  • 5C
    13
  • TAB-seq
    8
  • iCLIP
    7
  • DNA-PET
    6
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • RNA binding
    542
Target of assay
  • RNA binding protein
    297
  • control
    244
  • transcription factor
    74
  • recombinant protein
    29
  • chromatin remodeller
    17
  • other post-translational modification
    1
  • tag
    1
Date released
  • August, 2018
    110
  • April, 2016
    108
  • November, 2015
    87
  • July, 2015
    65
  • May, 2016
    35
  • March, 2014
    30
  • August, 2016
    20
  • September, 2016
    20
  • November, 2017
    16
  • August, 2017
    11
  • December, 2015
    10
  • October, 2016
    10
  • August, 2011
    8
  • December, 2017
    7
  • April, 2018
    4
  • April, 2017
    1
Available data
  • bam
    529
  • fastq
    529
  • bigWig
    467
  • bed narrowPeak
    225
  • bigBed narrowPeak
    225
  • bed bedGraph
    30
  • tsv
    30
  • bed broadPeak
    6
  • bigBed broadPeak
    6
Experiment status
  • released
    504
  • archived
    25
  • revoked
    13
Organism
  • Homo sapiens
    512
  • Drosophila melanogaster
    30
Biosample type
  • cell line
    538
  • tissue
    4
Organ
  • blood
    294
  • bodily fluid
    294
  • liver
    214
  • embryo
    30
  • adrenal gland
    4
Cell
  • cancer cell
    494
  • epithelial cell
    214
  • lymphoblast
    14
Project
  • ENCODE
    512
  • modENCODE
    30
Genome assembly
  • hg19
    474
  • GRCh38
    459
  • dm3
    30
Lab
  • Gene Yeo, UCSD
    469
  • John Rinn, Broad
    35
  • Brenton Graveley, UConn
    30
  • Scott Tenenbaum, SUNY-Albany
    8
Audit category:
  • partially characterized antibody
    21
  • uncharacterized antibody
    6
  • antibody not characterized to standard
    3
  • missing possible_controls
    1
Audit category:
  • missing analysis_step_run
    223
  • missing genetic modification characterization
    30
  • antibody characterized with exemption
    7
BIOSAMPLE
ASSAY

542 results

Clear Filters
eCLIP
RIP-seq
cell line
K56225129
HepG2214
S2R+30
GM1287814
tissue
adrenal gland4
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