Toggle navigation
ENCODE
Data
Matrix
Search
Summary
Search by region
Reference epigenomes
Publications
Encyclopedia
About
Visualize (SCREEN)
Matrix
Search
Methods
Materials & Methods
Antibodies
Biosamples
Genome references
Standards and guidelines
Ontologies
File formats
Software tools
Pipelines
Release policy
Data access
Schemas
Help
Getting started
Tutorials
REST API
Cart
Project overview
Acknowledgements
Contact
News
Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
541
shRNA RNA-seq
478
eCLIP
231
RNA Bind-n-Seq
79
RIP-seq
66
siRNA RNA-seq
63
CRISPR RNA-seq
38
RIP-chip
18
iCLIP
7
CRISPRi RNA-seq
6
ChIA-PET
2
Switchgear
2
Assay category
RNA binding
66
Target of assay
RNA binding protein
66
recombinant protein
29
transcription factor
23
chromatin remodeller
17
control
6
other post-translational modification
1
tag
1
Date released
May, 2016
33
March, 2014
29
August, 2011
4
Available data
bam
63
fastq
63
tsv
30
bed bedGraph
29
bed broadPeak
4
bigBed broadPeak
4
bigWig
4
Experiment status
released
38
archived
25
revoked
3
Organism
Homo sapiens
37
Drosophila melanogaster
29
Biosample type
cell line
66
Organ
blood
37
bodily fluid
37
embryo
29
Cell
cancer cell
26
lymphoblast
11
Project
ENCODE
37
modENCODE
29
Genome assembly
dm3
29
hg19
9
Lab
John Rinn, Broad
33
Brenton Graveley, UConn
29
Scott Tenenbaum, SUNY-Albany
4
Audit category:
partially characterized antibody
19
uncharacterized antibody
6
antibody not characterized to standard
3
Audit category:
missing genetic modification characterization
29
BIOSAMPLE
ASSAY
66 results
Clear Filters
RIP-seq
cell line
S2R+
29
K562
26
GM12878
11
Download
Visualize