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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 170Transcription
Date released
  • 69July, 2013
  • 26February, 2016
  • 20January, 2016
  • 20March, 2016
  • 18July, 2016
  • 13January, 2017
  • 2February, 2017
  • 2November, 2014
Available data
  • 103fastq
  • 99bam
  • 99bigWig
  • 99tsv
Organism
  • 105Homo sapiens
  • 65Mus musculus
Biosample type
  • 117tissue
  • 37primary cell
  • 6stem cell
  • 5in vitro differentiated cells
  • 4immortalized cell line
  • 1induced pluripotent stem cell line
Organ
  • 24brain
  • 17embryonic structure
  • 15extraembryonic component
  • 11heart
  • 11penis
  • 10skin of body
  • 8liver
  • 6mammary gland
  • 4connective tissue
  • 4kidney
  • 4lung
  • 4muscle organ
  • 4pancreas
  • 4stomach
  • 3adrenal gland
  • 3blood
  • 3gonad
  • 3intestine
  • 3placenta
  • 2prostate gland
  • 2testis
  • 2thyroid gland
  • 2uterus
  • 2vagina
  • 1ovary
  • 1thymus
  • 1urinary bladder
Project
  • 101ENCODE
  • 69Roadmap
Genome assembly (visualization)
  • 65mm10
  • 34GRCh38
Audit category:
  • 67missing RNA fragment size
Audit category:
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

170 results

search-icontable-tab-icon
Clear Filters
microRNA-seq
tissue
forebrain7
heart7
hindbrain6
liver6
midbrain6
primary cell
foreskin melanocyte5
cortex derived neurospheres4
ganglionic eminence derived neurospheres4
foreskin fibroblast3
foreskin keratinocyte3
stem cell
H1-hESC3
mammary stem cell2
UCSF-41
in vitro differentiated cells
bipolar neuron1
hepatocyte1
myocyte1
neural progenitor cell1
smooth muscle cell1
immortalized cell line
GM128781
HCT1161
K5621
MCF-71
induced pluripotent stem cell line
induced pluripotent stem cell1
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