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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 217DNA methylation
  • 217DNA sequencing
Date released
  • 134July, 2013
  • 28June, 2014
  • 12June, 2015
  • 11March, 2016
  • 9December, 2014
  • 8August, 2015
  • 6October, 2016
  • 3October, 2015
  • 2July, 2014
  • 1February, 2016
  • 1June, 2016
  • 1May, 2016
  • 1September, 2014
Available data
  • 133fastq
  • 117bed bedMethyl
  • 117bigBed bedMethyl
  • 116bam
  • 116bigWig
  • 3sra
Organism
  • 145Homo sapiens
  • 72Mus musculus
Biosample type
  • 152tissue
  • 39primary cell
  • 13in vitro differentiated cells
  • 7stem cell
  • 4immortalized cell line
  • 2induced pluripotent stem cell line
Organ
  • 35brain
  • 22embryonic structure
  • 14heart
  • 12intestine
  • 11liver
  • 9extraembryonic component
  • 8connective tissue
  • 8stomach
  • 7lung
  • 7mammary gland
  • 6adipose tissue
  • 5muscle organ
  • 4kidney
  • 4large intestine
  • 4skin of body
  • 4small intestine
  • 3adrenal gland
  • 3pancreas
  • 3penis
  • 3spleen
  • 2blood
  • 2blood vessel
  • 2esophagus
  • 2placenta
  • 2thymus
  • 2urinary bladder
  • 1gonad
  • 1ovary
  • 1spinal cord
Project
  • 134Roadmap
  • 83ENCODE
Genome assembly (visualization)
  • 72mm10
  • 44GRCh38
Audit category:
  • 8insufficient read length
  • 2insufficient coverage
Audit category:
  • 8inconsistent platforms
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

217 results

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Clear Filters
WGBS
tissue
liver10
heart9
forebrain8
hindbrain8
midbrain8
primary cell
sperm4
CD4-positive helper T cell3
CD8-positive, alpha-beta T cell3
myoepithelial cell of mammary gland3
IMR-902
in vitro differentiated cells
HUES64-derived CD184+2
ectodermal cell2
mesodermal cell2
neuronal stem cell2
hepatocyte1
stem cell
H1-hESC3
H91
HUES641
UCSF-41
mammary stem cell1
immortalized cell line
GM128782
HepG21
K5621
induced pluripotent stem cell line
iPS DF 19.111
iPS DF 6.91
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