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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 219DNA methylation
  • 219DNA sequencing
Date released
  • 116July, 2013
  • 82September, 2011
  • 19December, 2010
  • 2July, 2012
Available data
  • 142fastq
  • 103bed bedMethyl
  • 103bigBed bedMethyl
Organism
  • 219Homo sapiens
Biosample type
  • 59tissue
  • 53primary cell
  • 48immortalized cell line
  • 27stem cell
  • 20induced pluripotent stem cell line
  • 12in vitro differentiated cells
Organ
  • 19connective tissue
  • 12brain
  • 9intestine
  • 8skin of body
  • 7kidney
  • 7large intestine
  • 7muscle organ
  • 5lung
  • 5stomach
  • 3heart
  • 3pancreas
  • 2bronchus
  • 2extraembryonic component
  • 2eye
  • 2liver
  • 2penis
  • 2small intestine
  • 1adrenal gland
  • 1blood vessel
  • 1breast
  • 1esophagus
  • 1gonad
  • 1mammary gland
  • 1mouth
  • 1placenta
  • 1prostate gland
  • 1testis
  • 1uterus
Project
  • 116Roadmap
  • 103ENCODE
Genome assembly (visualization)
  • 103hg19
Audit category:
  • 1missing documents
BIOSAMPLE
ASSAY

219 results

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Clear Filters
RRBS
tissue
embryoid body cell6
kidney4
skeletal muscle tissue4
brain3
lung3
primary cell
common myeloid progenitor, CD34-positive9
fibroblast6
astrocyte2
bronchial epithelial cell2
foreskin fibroblast2
immortalized cell line
MCF-75
LNCaP clone FGC3
GM128782
HEK2932
HepG22
stem cell
H1-hESC6
H7-hESC2
ES-I31
H91
HUES11
induced pluripotent stem cell line
iPS-20b5
iPS-18c3
iPS-15b2
iPS-18b2
iPS-11a1
in vitro differentiated cells
chondrocyte3
HUES64-derived CD184+2
mesenchymal stem cell2
myotube2
neuron2
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