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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7758
ChIP-seq
811
DNase-seq
724
polyA mRNA RNA-seq
526
shRNA RNA-seq
498
total RNA-seq
321
eCLIP
292
RNA microarray
259
DNAme array
219
RRBS
217
WGBS
211
small RNA-seq
170
microRNA-seq
159
RNA Bind-n-Seq
155
RAMPAGE
142
genotyping array
121
CAGE
117
ATAC-seq
115
microRNA counts
112
single cell RNA-seq
109
siRNA RNA-seq
90
Repli-seq
73
RIP-seq
67
MRE-seq
63
Repli-chip
55
MeDIP-seq
40
genetic modification DNase-seq
39
ChIA-PET
37
FAIRE-seq
34
PAS-seq
32
RIP-chip
32
polyA depleted RNA-seq
31
RNA-PET
27
CRISPR RNA-seq
27
genotyping HTS
19
Hi-C
14
MS-MS
13
5C
8
TAB-seq
7
iCLIP
6
DNA-PET
2
5' RLM RACE
2
MNase-seq
2
Switchgear
Assay category
73
RNA binding
Target of assay
66
RNA binding protein
29
recombinant protein
24
transcription factor
17
chromatin remodeller
6
control
1
other post-translational modification
1
tag
Date released
35
May, 2016
30
March, 2014
8
August, 2011
Available data
73
bam
73
fastq
32
tsv
30
bed bedGraph
8
bigWig
6
bed broadPeak
6
bigBed broadPeak
Organism
43
Homo sapiens
30
Drosophila melanogaster
Biosample type
73
immortalized cell line
Project
43
ENCODE
30
modENCODE
Genome assembly (visualization)
8
hg19
Audit category:
21
partially characterized antibody
5
uncharacterized antibody
4
antibody not characterized to standard
1
missing possible_controls
BIOSAMPLE
ASSAY
73 results
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RIP-seq
immortalized cell line
S2R+
30
K562
29
GM12878
14
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