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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 155Transcription
Date released
  • 60August, 2016
  • 22June, 2014
  • 19August, 2015
  • 16April, 2015
  • 16October, 2016
  • 11November, 2014
  • 4March, 2016
  • 4May, 2016
  • 3September, 2014
Available data
  • 155bam
  • 155bed tss_peak
  • 155bigBed tss_peak
  • 155bigWig
  • 155fastq
  • 155gff gff3
  • 155tsv
  • 70bed idr_peak
  • 70bigBed idr_peak
Organism
  • 155Homo sapiens
Biosample type
  • 104tissue
  • 27immortalized cell line
  • 16primary cell
  • 6in vitro differentiated cells
  • 1induced pluripotent stem cell line
  • 1stem cell
Organ
  • 13connective tissue
  • 13muscle organ
  • 12intestine
  • 9skin of body
  • 9stomach
  • 8esophagus
  • 8heart
  • 8large intestine
  • 7adipose tissue
  • 7lung
  • 5liver
  • 5thyroid gland
  • 4adrenal gland
  • 4gonad
  • 4kidney
  • 4spleen
  • 4uterus
  • 3blood vessel
  • 3brain
  • 3breast
  • 2ovary
  • 2pancreas
  • 2prostate gland
  • 2testis
  • 1bronchus
  • 1extraembryonic component
  • 1eye
  • 1mouth
  • 1spinal cord
  • 1tongue
  • 1urinary bladder
  • 1vagina
Project
  • 155ENCODE
Genome assembly (visualization)
  • 155GRCh38
  • 155hg19
Audit category:
  • 9unreplicated experiment
BIOSAMPLE
ASSAY

155 results

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Clear Filters
RAMPAGE
tissue
stomach5
thyroid gland5
Peyer's patch4
adrenal gland4
esophagus muscularis mucosa4
immortalized cell line
HT10803
NCI-H4603
SK-MEL-53
SK-N-DZ3
A1721
primary cell
airway epithelial cell1
bronchus fibroblast of lung1
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endometrial microvascular endothelial cells1
in vitro differentiated cells
cardiac muscle cell1
hepatocyte1
myotube1
neural cell1
neural progenitor cell1
induced pluripotent stem cell line
induced pluripotent stem cell1
stem cell
H7-hESC1
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