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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7758
ChIP-seq
811
DNase-seq
724
polyA mRNA RNA-seq
526
shRNA RNA-seq
498
total RNA-seq
321
eCLIP
292
RNA microarray
259
DNAme array
219
RRBS
217
WGBS
211
small RNA-seq
170
microRNA-seq
159
RNA Bind-n-Seq
155
RAMPAGE
142
genotyping array
121
CAGE
117
ATAC-seq
115
microRNA counts
112
single cell RNA-seq
109
siRNA RNA-seq
90
Repli-seq
73
RIP-seq
67
MRE-seq
63
Repli-chip
55
MeDIP-seq
40
genetic modification DNase-seq
39
ChIA-PET
37
FAIRE-seq
34
PAS-seq
32
RIP-chip
32
polyA depleted RNA-seq
31
RNA-PET
27
CRISPR RNA-seq
27
genotyping HTS
19
Hi-C
14
MS-MS
13
5C
8
TAB-seq
7
iCLIP
6
DNA-PET
2
5' RLM RACE
2
MNase-seq
2
Switchgear
Assay category
67
DNA methylation
67
DNA sequencing
Date released
43
July, 2013
9
April, 2011
6
March, 2011
4
August, 2011
4
May, 2014
1
October, 2010
Available data
4
bam
Organism
65
Homo sapiens
2
Mus musculus
Biosample type
35
primary cell
11
immortalized cell line
8
stem cell
7
in vitro differentiated cells
6
tissue
Organ
10
mammary gland
9
penis
7
embryonic structure
6
skin of body
3
blood
3
brain
3
connective tissue
3
liver
Project
43
Roadmap
24
ENCODE
Audit category:
2
missing documents
BIOSAMPLE
ASSAY
67 results
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MRE-seq
primary cell
luminal epithelial cell of mammary gland
5
myoepithelial cell of mammary gland
4
CD4-positive helper T cell
3
CD4-positive, alpha-beta memory T cell
3
CD8-positive, alpha-beta T cell
3
+ See 7 more…
immortalized cell line
GM12878
2
K562
2
CH12.LX
1
GM12891
1
GM12892
1
+ See 4 more…
stem cell
mammary stem cell
4
H1-hESC
2
BG02ES
1
H9
1
in vitro differentiated cells
endodermal cell
7
tissue
brain
3
liver
3
See all biosamples
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