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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    431
  • DNase-seq
    34
  • Repli-seq
    30
  • RNA microarray
    22
  • RIP-chip
    21
  • polyA RNA-seq
    16
  • CAGE
    15
  • small RNA-seq
    14
  • MS-MS
    11
  • RRBS
    11
  • DNAme array
    9
  • genotyping array
    9
  • RIP-seq
    8
  • RNA-PET
    8
  • polyA depleted RNA-seq
    8
  • FAIRE-seq
    7
  • DNA-PET
    6
  • 5C
    5
  • total RNA-seq
    5
  • ChIA-PET
    3
  • MNase-seq
    2
  • MRE-seq
    2
  • MeDIP-seq
    2
  • Repli-chip
    1
Assay category
  • 3D chromatin structure
    3
Target of assay
  • transcription factor
    3
  • RNA binding protein
    1
Date released
  • May, 2012
    3
Available data
  • bam
    3
  • bed bed12
    3
  • bigBed bed12
    3
  • bigWig
    3
  • fastq
    3
Experiment status
  • released
    3
Organism
  • Homo sapiens
    3
Biosample type
  • cell line
    3
Organ
  • blood
    3
  • bodily fluid
    3
  • mammary gland
    3
  • intestine
    1
  • large intestine
    1
  • uterus
    1
Cell
  • cancer cell
    3
Project
  • ENCODE
    3
Genome assembly
  • hg19
    3
Lab
  • Yijun Ruan, JAX
    3
BIOSAMPLE
ASSAY

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ChIA-PET
cell line
K5622
NB41
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