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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 121Transcription
Date released
  • 43March, 2014
  • 33May, 2012
  • 24December, 2011
  • 21March, 2011
Available data
  • 118fastq
  • 78bam
  • 78bigWig
  • 77bed bedRnaElements
  • 77bigBed bedRnaElements
  • 68bed tss_peak
  • 68bigBed tss_peak
  • 68gff gff3
  • 68tsv
  • 52bed idr_peak
  • 52bigBed idr_peak
  • 42gtf
  • 3csfasta
  • 3csqual
Organism
  • 78Homo sapiens
  • 39Drosophila melanogaster
  • 4Drosophila pseudoobscura
Biosample type
  • 44immortalized cell line
  • 32primary cell
  • 19whole organisms
  • 18tissue
  • 7stem cell
  • 1in vitro differentiated cells
Organ
  • 14connective tissue
  • 10skin of body
  • 8blood vessel
  • 6vein
  • 5gonad
  • 3extraembryonic component
  • 3ovary
  • 2adipose tissue
  • 2placenta
  • 2testis
  • 1artery
  • 1bone element
  • 1lung
  • 1mammary gland
  • 1muscle organ
  • 1penis
  • 1prostate gland
Project
  • 78ENCODE
  • 43modENCODE
Genome assembly (visualization)
  • 71hg19
  • 68GRCh38
Audit category:
  • 48missing controlled_by
  • 10missing possible_controls
Audit category:
  • 71inconsistent control read length
  • 28inconsistent platforms
  • 10missing external identifiers
  • 4missing genotype
BIOSAMPLE
ASSAY

121 results

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Clear Filters
CAGE
immortalized cell line
K5629
GM128786
HeLa-S36
HepG26
ML-DmBG3-c24
primary cell
endothelial cell of umbilical vein5
keratinocyte5
IMR-903
melanocyte of skin2
B cell1
whole organisms
whole organism15
carcass4
tissue
head4
digestive system3
ovary3
central nervous system2
testis2
stem cell
H1-hESC4
mesenchymal stem cell of Wharton's jelly1
mesenchymal stem cell of adipose1
mesenchymal stem cell of the bone marrow1
in vitro differentiated cells
hematopoietic multipotent progenitor cell1
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