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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 7758ChIP-seq
  • 811DNase-seq
  • 724polyA mRNA RNA-seq
  • 526shRNA RNA-seq
  • 498total RNA-seq
  • 321eCLIP
  • 292RNA microarray
  • 259DNAme array
  • 219RRBS
  • 217WGBS
  • 211small RNA-seq
  • 170microRNA-seq
  • 159RNA Bind-n-Seq
  • 155RAMPAGE
  • 142genotyping array
  • 121CAGE
  • 117ATAC-seq
  • 115microRNA counts
  • 112single cell RNA-seq
  • 109siRNA RNA-seq
  • 90Repli-seq
  • 73RIP-seq
  • 67MRE-seq
  • 63Repli-chip
  • 55MeDIP-seq
  • 40genetic modification DNase-seq
  • 39ChIA-PET
  • 37FAIRE-seq
  • 34PAS-seq
  • 32RIP-chip
  • 32polyA depleted RNA-seq
  • 31RNA-PET
  • 27CRISPR RNA-seq
  • 27genotyping HTS
  • 19Hi-C
  • 14MS-MS
  • 135C
  • 8TAB-seq
  • 7iCLIP
  • 6DNA-PET
  • 25' RLM RACE
  • 2MNase-seq
  • 2Switchgear
Assay category
  • 117DNA accessibility
Date released
  • 31January, 2017
  • 27May, 2017
  • 19June, 2016
  • 13June, 2017
  • 13October, 2016
  • 10March, 2016
  • 4March, 2017
Available data
  • 117fastq
  • 86bam
  • 83bigBed narrowPeak
  • 83bigWig
  • 80bed narrowPeak
  • 10bigBed bed3+
Organism
  • 70Homo sapiens
  • 47Mus musculus
Biosample type
  • 74tissue
  • 30in vitro differentiated cells
  • 10primary cell
  • 2immortalized cell line
  • 1stem cell
Organ
  • 17brain
  • 12intestine
  • 8large intestine
  • 7muscle organ
  • 5stomach
  • 4heart
  • 4liver
  • 4pancreas
  • 3adrenal gland
  • 3blood vessel
  • 3breast
  • 3thyroid gland
  • 2adipose tissue
  • 2artery
  • 2bone element
  • 2connective tissue
  • 2esophagus
  • 2gonad
  • 2kidney
  • 1embryonic structure
  • 1lung
  • 1ovary
  • 1prostate gland
  • 1spleen
  • 1testis
Project
  • 84ENCODE
  • 33GGR
Genome assembly (visualization)
  • 45GRCh38
  • 32mm10
Audit category:
  • 27unreplicated experiment
Audit category:
  • 8inconsistent platforms
BIOSAMPLE
ASSAY

117 results

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Clear Filters
ATAC-seq
tissue
forebrain7
hindbrain5
body of pancreas4
gastrocnemius medialis4
midbrain4
in vitro differentiated cells
dendritic cell30
primary cell
activated regulatory T-cells1
common myeloid progenitor1
erythroblast1
erythroid progenitor cell1
granulocyte monocyte progenitor cell1
immortalized cell line
G1E1
G1E-ER41
stem cell
hematopoietic stem cell1
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