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Encyclopedia

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 3048other
  • 1414candidate regulatory elements
  • 66chromatin state
  • 6gene expression
  • 6transcript expression
  • 2enhancer predictions
  • 2representative DNase hypersensitivity sites
Date released
  • 3048April, 2018
  • 754August, 2017
  • 740September, 2017
  • 2April, 2017
Target(s) of assay
  • 555H3K4me3
  • 422H3K27ac
  • 229CTCF
Available data
  • 3048bigWig
  • 1414bed bed3+
  • 1410bigBed bed3+
  • 65bigBed bed9
  • 63bed bed9
  • 12tsv
Organism
  • 4087Homo sapiens
  • 457Mus musculus
Biosample type
  • 846tissue
  • 271primary cell
  • 227cell line
  • 79in vitro differentiated cells
  • 51stem cell
  • induced pluripotent stem cell line
Organ
  • 203brain
  • 127embryo
  • 113blood
  • 113bodily fluid
  • 106lung
  • 103connective tissue
  • 99musculature of body
  • 98kidney
  • 91epithelium
  • 91intestine
  • 80limb
  • 72heart
  • 55liver
  • 51large intestine
  • 49skin of body
  • 45stomach
  • 36lymph node
  • 32vasculature
  • 29extraembryonic component
  • 26blood vessel
  • 23mammary gland
  • 22bone element
  • 22small intestine
  • 21thymus
  • penis
  • 19pancreas
  • 19spleen
  • 18eye
  • 16gonad
  • 16placenta
  • 15adrenal gland
  • 14ureter
  • 11spinal cord
  • 11uterus
  • 10bone marrow
  • 10esophagus
  • 10mouth
  • 10prostate gland
  • 9testis
  • 8thyroid gland
  • 7adipose tissue
  • 6artery
  • 6ovary
  • 5bronchus
  • 4vein
  • 3vagina
  • 2tongue
  • 1breast
  • 1lymphatic vessel
  • 1lymphoid tissue
  • 1urinary bladder
Project
  • 4544ENCODE
Genome assembly (visualization)
  • 4079hg19
  • 451mm10
Encyclopedia version
  • 45444
  • 8033
  • 1412
  • 116ROADMAP
  • 27ENCODE2
  • 31
  • 2Blacklists
Audit category:
  • 23inconsistent assembly
biosample_type!
  • induced pluripotent stem cell line
organ_slims!
  • penis
BIOSAMPLE
TYPE

4544 results

search-icontable-tab-icon
Clear Filters
other
candidate regulatory elements
chromatin state
gene expression
transcript expression
enhancer predictions
representative DNase hypersensitivity sites
tissue
heart4871
liver347
lung374
stomach364
midbrain297
primary cell
common myeloid progenitor, CD34-positive17
CD4-positive helper T cell15
fibroblast of lung14
B cell10
CD14-positive monocyte9
cell line
MEL cell line9
HeLa-S38
MCF-78
SK-N-SH7
A5495
in vitro differentiated cells
cardiac mesoderm6
mesenchymal stem cell6
bipolar neuron5
hepatocyte5
myotube5
stem cell
H910
H1-hESC5
ES-Bruce44
ES-E144
E14TG2a.43
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