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Annotation matrix

Enter search terms to filter the annotations included in the matrix.

Annotation type
  • other
    3024
  • candidate regulatory elements
    1363
  • chromatin state
    62
  • gene expression
    6
  • transcript expression
    6
  • enhancer predictions
    2
  • representative DNase hypersensitivity sites
    2
Date released
  • April, 2018
    3024
  • August, 2017
    755
  • September, 2017
    684
  • April, 2017
    2
Target(s) of assay
  • H3K4me3
    559
  • H3K27ac
    427
  • CTCF
    225
Available data
  • bigWig
    3024
  • bed bed3+
    1363
  • bigBed bed3+
    1359
  • bigBed bed9
    61
  • bed bed9
    59
  • tsv
    12
Organism
  • Homo sapiens
    4030
  • Mus musculus
    435
Biosample type
  • tissue
    1940
  • primary cell
    1270
  • cell line
    770
  • in vitro differentiated cells
    415
Organ
  • blood
    593
  • bodily fluid
    593
  • brain
    418
  • embryo
    415
  • intestine
    355
  • musculature of body
    339
  • connective tissue
    335
  • skin of body
    278
  • epithelium
    259
  • lung
    226
  • large intestine
    219
  • heart
    168
  • penis
    164
  • stomach
    141
  • kidney
  • small intestine
    118
  • liver
    103
  • extraembryonic component
    101
  • limb
    96
  • mammary gland
    95
  • vasculature
    80
  • blood vessel
    74
  • thymus
    69
  • pancreas
    67
  • lymph node
    60
  • spleen
    43
  • arterial blood vessel
    40
  • gonad
    40
  • placenta
    40
  • adrenal gland
    39
  • uterus
    35
  • esophagus
    34
  • adipose tissue
    31
  • ovary
    30
  • vein
    28
  • bone element
    24
  • eye
    18
  • ureter
    14
  • spinal cord
    11
  • bone marrow
    10
  • mouth
    10
  • prostate gland
    10
  • testis
    9
  • thyroid gland
    8
  • bronchus
    5
  • vagina
    3
  • tongue
    2
  • breast
    1
  • lymphatic vessel
    1
  • lymphoid tissue
    1
  • urinary bladder
    1
Cell
  • hematopoietic cell
    684
  • leukocyte
    563
  • stem cell
    501
  • T cell
    357
  • epithelial cell
    276
  • cancer cell
    258
  • fibroblast
    184
  • neural cell
    140
  • induced pluripotent stem cell
    119
  • B cell
    100
  • myeloid cell
    95
  • keratinocyte
    81
  • monocyte
    57
  • melanocyte
    52
  • endothelial cell
    36
  • lymphoblast
    34
  • myoblast
    28
  • neuroblastoma cell
    13
  • cardiocyte
    7
  • smooth muscle cell
    4
  • pericyte
    1
Project
  • ENCODE
    4465
Genome assembly
  • hg19
    4029
  • mm10
    433
  • GRCh38
    8
Encyclopedia version
  • 4
    4465
  • 3
    824
  • 2
    141
  • ROADMAP
    126
  • ENCODE2
    27
  • 1
    3
  • Blacklists
    2
Audit category:
  • inconsistent assembly
    23
  • missing analysis_step_run
    14
biosample_ontology.organ_slims!
  • kidney
BIOSAMPLE
TYPE

4465 results

Clear Filters
other
candidate regulatory elements
chromatin state
gene expression
transcript expression
enhancer predictions
representative DNase hypersensitivity sites
tissue
lung48374
stomach48364
heart244871
thymus4821
brain4819
primary cell
common myeloid progenitor, CD34-positive9617
B cell4810
CD14-positive monocyte489
foreskin fibroblast489
mammary epithelial cell489
cell line
H92410
HeLa-S3248
A549245
GM12878245
H1-hESC245
in vitro differentiated cells
mesenchymal stem cell726
neural stem progenitor cell485
myotube245
endodermal cell244
trophoblast cell244
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