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Encyclopedia

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 422enhancer-like regions
  • 277promoter-like regions
  • 102chromatin state
  • 8gene expression
  • 8transcript expression
  • 2DNase master peaks
  • 1validated enhancers
Date released
  • 441August, 2016
  • 260June, 2016
  • 93July, 2013
  • 17November, 2016
  • 9October, 2015
Available data
  • 705bed bed3+
  • 700bigBed bed3+
  • 93bigBed bed9
  • 14tsv
  • 2bed narrowPeak
Organism
  • 611Homo sapiens
  • 209Mus musculus
Biosample type
  • 330tissue
  • 261primary cell
  • 130immortalized cell line
  • 33stem cell
  • 30in vitro differentiated cells
  • 16induced pluripotent stem cell line
  • 1whole organisms
Organ
  • 98brain
  • 77connective tissue
  • 46skin of body
  • 44intestine
  • 41embryonic structure
  • 30lung
  • 29heart
  • 28penis
  • muscle organ
  • 23large intestine
  • 22blood vessel
  • 21stomach
  • 20liver
  • 19extraembryonic component
  • 19kidney
  • 14small intestine
  • 11mammary gland
  • 10thymus
  • 9eye
  • 9placenta
  • 8vein
  • 6esophagus
  • 6gonad
  • 6mouth
  • 6pancreas
  • 5adrenal gland
  • 5ovary
  • 4artery
  • 4bone element
  • 4spinal cord
  • 4spleen
  • 3blood
  • 3bronchus
  • 2tongue
  • 1adipose tissue
  • 1lymphatic vessel
  • 1prostate gland
  • 1skeleton
  • 1testis
  • 1urinary bladder
Project
  • 727ENCODE
  • 93Roadmap
Genome assembly (visualization)
  • 592hg19
  • 174mm10-minimal
  • 28mm10
  • 1mm9
Encyclopedia version
  • 8203
  • 1402
  • 120ROADMAP
  • 27ENCODE2
  • 31
  • 34
  • 2Blacklists
BIOSAMPLE
TYPE

820 results

search-icontable-tab-icon
Clear Filters
enhancer-like regions
promoter-like regions
chromatin state
gene expression
transcript expression
DNase master peaks
validated enhancers
tissue
midbrain149
hindbrain139
forebrain118
liver991
stomach1062
primary cell
foreskin fibroblast862
CD4-positive helper T cell555
fibroblast of lung741
CD4-positive, alpha-beta memory T cell333
B cell431
immortalized cell line
GM12878422
HeLa-S3422
HepG2422
K562422
A549222
stem cell
H1-hESC612
H9311
neuronal stem cell311
H7-hESC12
HUES48111
in vitro differentiated cells
mesenchymal stem cell422
mesendoderm31
chondrocyte111
ectodermal cell111
endodermal cell111
induced pluripotent stem cell line
iPS DF 19.11311
iPS DF 6.9311
iPS-18c111
iPS-20b111
whole organisms
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