Matrix – ENCODE

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Type

Biosample

	footprints	candidate Cis-Regulatory Elements	pseudobulk	gkm-SVM-model	BPNet-model	chromatin state	ChromBPNet-model	element gene regulatory interaction predictions	BPNet-control	PWMs	ChromBPNet-bias-model	fine-mapped variants	cell type annotation	physical modeling	eQTLs	genotyping	cross-species functional conservation	regulatory elements signal matrix	overlap	other	transcript expression	gene expression	caQTLs	validated enhancers	representative DNase hypersensitivity sites	exclusion list	consensus DNase hypersensitivity sites	transcription start sites	binding sites	element gene regulatory interactions	in vivo enhancer evaluations
tissue	173175	3445	5708	1214	292	971	783	688	267		208		114	35	47				1	7			2	3
adrenal gland	4075	77	818	38	5	22	22	15	5		2		5	1	1					2
gastrocnemius medialis	4647	20		16	5	12	8	6	5		1			1	1
right lobe of liver	4662	15		12	4	7	11	5	4					1	1
upper lobe of left lung	4071	16		24	11	10	7	7	11						1
stomach	3495	118	18	41	7	38	22	22	7		14		4	1	1

cell line	168136	945		2889	1965	333	243	229	632		12			12	2				14				3	4						1	1
K562	4665	19		697	456	13	11	10	211		3			1					1											1	1
MCF-7	4654	23		155	94	8	2	8	23					1
HepG2	1743	8		648	553	8	7	3	84		2			1					1
A549	2321	14		251	174	22	3	15	72
HeLa-S3	2312	16		71	42	7	2	4	10										2

primary cell	138755	1564		546	55	413	467	576	52		63			9					2				2
CD14-positive monocyte	4060	40		8	2	14	4	8	2		1			1
B cell	4059	35		10	2	10	6	7	2		1			1
T-helper 17 cell	4058	14		7		4	9	7			1
T-helper 2 cell	4042	19		7		4	7	9			2
CD4-positive naive resting alpha-beta T cell	4062	6		5

in vitro differentiated cells	18566	239		112	26	86	69	45	23		9												2
dendritic cell	2333			29			24
cardiac muscle cell	1159	8		3	1	2	1	2	1
mesothelial cell of epicardium	1152	1		2	1	1	1	2	1
hematopoietic multipotent progenitor cell	583	36		12		10	12	12			2
endodermal cell	585	12		2		8	2	2

organoid	1158	13		6	7	8	1	3	7
brain	1158	7		3	4	5	1	2	4
nephron		6		3	3	3			3
intestinal epithelium								1

Annotation Matrix

Showing 526306 results