Functional Characterization Experiment summary for ENCSR822DCN

doi:10.17989/ENCSR822DCN

Summary

Status
released
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for multiple loci
Biosample Type
cell line
Perturbation type
CRISPRi
Tiling modality
peak tiling
Examined loci
HNRNPA1 (90-100%)
CRISPR screen readout
PrimeFlow
Replication type
unreplicated
Nucleic acid type
DNA
Size range
200-210

Attribution

ENCODE4 project
Lab
Jesse Engreitz, Stanford
Award
UM1HG009436 (Will Greenleaf, Stanford)
Project
ENCODE
Aliases
jesse-engreitz:CRISPRiFlowFISH-K562-HNRNPA1-binF_funccharexp
Date released
January 7, 2021
Functional Characterization Series
ENCSR922PHL 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
12Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS026WVYENCGM924EDC, ENCGM912CXWENCLB042THO
14Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS026WVYENCGM924EDC, ENCGM912CXWENCLB242KVV
11Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS026WVYENCGM924EDC, ENCGM912CXWENCLB634MMT
13Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)ENCBS026WVYENCGM924EDC, ENCGM912CXWENCLB920SRG