1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. GM23338

Experiment summary for ENCSR987GXT

doi:10.17989/ENCSR987GXT

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens GM23338 originated from GM23248
Biosample Type
cell line
Replication type
isogenic
Nucleic acid type
DNA
Size range
200-600
Fragmentation methods
sonication (generic)
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 1439
Date submitted
December 10, 2015
Date released
October 19, 2017
Annotation (gkmsvm-model)
Submitter comment
This experiment is being used in the ENCODE-DREAM Transcription Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026). The files will be unavailable until after the challenge completes on 09-30-16. UPDATE: There will be a second round to the challenge that is expected to end on 01-11-2017
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag DREAM

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens GM23338 cell line originated from GM23248ENCBS368AAAENCAB000AXXENCLB162FOM
21Homo sapiens GM23338 cell line originated from GM23248ENCBS373AAAENCAB000AXXENCLB378YEF

Files

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Output type
Replicates

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