Experiment summary for ENCSR987FTF
doi:10.17989/ENCSR987FTF
Summary
- Status
- released
- Assay
- eCLIP
- Target
- RBFOX2
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eCLIP experiment on HepG2 against RBFOX2
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- References
- Aliases
- gene-yeo:204
- Date submitted
- March 21, 2016
- Date released
- July 15, 2015
- Submitter comment
- Fastq files ENCFF591SSP, ENCFF172GUS, ENCFF289OFA, and ENCFF647KDW contain reads of mixed lengths. Read length followed by number of reads: ENCFF591SSP (28, 24096), (29, 29994), (30, 36373), (31, 44027), (32, 52166), (33, 62212), (34, 72149), (35, 83327), (36, 95836), (37, 111280), (38, 124658), (39, 145860), (40, 173927), (41, 297859), (42, 757173), (43, 1869770), (44, 6256221); ENCFF172GUS (28, 30109), (29, 37059), (30, 44823), (31, 54327), (32, 64359), (33, 76121), (34, 88715), (35, 100926), (36, 115541), (37, 131323), (38, 148449), (39, 168373), (40, 192392), (41, 295921), (42, 729070), (43, 1644786), (44, 6116564); ENCFF289OFA (30, 101628), (31, 43075), (32, 50755), (33, 59105), (34, 68593), (35, 79699), (36, 90230), (37, 99313), (38, 111706), (39, 126182), (40, 138622), (41, 158824), (42, 186932), (43, 298418), (44, 802322), (45, 2032984), (46, 5788540); and ENCFF647KDW (30, 88954), (31, 46645), (32, 54434), (33, 64706), (34, 75349), (35, 87425), (36, 100155), (37, 111358), (38, 125762), (39, 140030), (40, 156664), (41, 177459), (42, 208190), (43, 306399), (44, 796621), (45, 1798999), (46, 5699708).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens HepG2 cell line | ENCBS547JWV | ENCAB592TEY | ENCLB180GIG |
| 2 | 1 | Homo sapiens HepG2 cell line | ENCBS537ADD | ENCAB592TEY | ENCLB696TLV |