Experiment summary for ENCSR980XNE

doi:10.17989/ENCSR980XNE

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
npax-4
Biosample summary
Caenorhabditis elegans strain OP493 (unc-119(tm4063) III; wgIs493) whole organism hermaphrodite late embryo 4 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans npax-4
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing NPAX-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:NPAX-4-OP493-LE
Date submitted
July 29, 2015
Date released
May 10, 2016
Submitter comment
ENCFF515TZH, ENCFF645POC, ENCFF062SMA, ENCFF115XCQ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain OP493 (unc-119(tm4063) III; wgIs493) hermaphrodite late embryo 4 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans npax-4ENCBS386VJJENCGM416HQFENCAB728YTOENCLB429ZJS
21Caenorhabditis elegans strain OP493 (unc-119(tm4063) III; wgIs493) hermaphrodite late embryo 4 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans npax-4ENCBS800ZFCENCGM416HQFENCAB728YTOENCLB820OIU